DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4860 and ivd

DIOPT Version :9

Sequence 1:NP_650163.2 Gene:CG4860 / 41480 FlyBaseID:FBgn0037999 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001011380.1 Gene:ivd / 496848 XenbaseID:XB-GENE-1008677 Length:419 Species:Xenopus tropicalis


Alignment Length:419 Identity:153/419 - (36%)
Similarity:229/419 - (54%) Gaps:18/419 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MQQLIRVARTLGQRS---SGAWSARIIAGGNRGIA---CLAALSETHQILQKTCREFANAELAPK 59
            |..|:|.|..:.:.|   ...||.|.     .||:   .:..|::..:.|::|...|....|.|.
 Frog     1 MAALLRKAVGVSRLSLPVLSQWSRRC-----SGISVDDTVNGLNDEQKQLRQTLHRFCQDHLNPV 60

  Fly    60 ARHHDREELYPAEQ---VRRLGELGLMSVTVREEYGGSGLDYQAYAIGMEEVARGDAAVSIVMGV 121
            |...|::..: ||.   .::|||||::.:|...|||||.:.|..:.:.:||::|..|||.:..|.
 Frog    61 ANEIDQKNNF-AEMRSFWKKLGELGVLGITAPVEYGGSAMGYLEHVLVVEEISRASAAVGLSYGA 124

  Fly   122 -NNLYLGAVQQHGTEQQKQDFLVPYTQGEHIAFYALSEPGNGSDAGAASTTAKLQGDSYQINGTK 185
             :||.:..:.::|.|.||:.:|.....||:|...|:|||.:|||..:....|:.:||.|.:||.|
 Frog   125 HSNLCINQIVRNGNEAQKEKYLPKLISGEYIGALAMSEPNSGSDVVSMRLKAEKKGDYYVLNGNK 189

  Fly   186 AWISNSKEASGGIVFATVDKSMK--HKGITAFLTPKDVPGLSIAKKESKMGMRATSTCQLVLEDV 248
            .||:|..:|...:|:...|.|.:  ..||||||..|.:||.|.|:|..|:|||.::||:||.||.
 Frog   190 FWITNGPDADVLVVYVKTDPSAQPASHGITAFLVEKGMPGFSTAQKLDKLGMRGSNTCELVFEDC 254

  Fly   249 HVPRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRVAFGKHLARLQLIQ 313
            .:|...|||..|.|..:.|..||..|:.::....||.||.|:.|:.|...|.|||:.:...||:|
 Frog   255 KIPEQNVLGHLGKGVYVLMSGLDLERLVLSGGPLGIMQAVLDHAIPYLHTREAFGQKIGHFQLMQ 319

  Fly   314 QKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMAKLHASESATFCAHQCIQILGGMGYTTDL 378
            .|:|||.||:...|...:..|...|.|...:|:.|...|:::|.||..|...||.|||.||..|.
 Frog   320 GKMADMYTRLAACRQYVYNVAKACDQGHFNSKDCAGVILYSAECATQVALDGIQCLGGNGYINDY 384

  Fly   379 PAELYYRNARVTEIYEGTSEIQRIVIANA 407
            |...:.|:|::.||..||||::|::|..|
 Frog   385 PMGRFLRDAKLYEIGAGTSEVRRMLIGRA 413

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4860NP_650163.2 CaiA 37..414 CDD:224871 143/377 (38%)
SCAD_SBCAD 39..410 CDD:173847 142/375 (38%)
ivdNP_001011380.1 IVD 37..416 CDD:173845 143/378 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 1 1.000 - - FOG0000508
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.920

Return to query results.
Submit another query.