DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4860 and gcdha

DIOPT Version :9

Sequence 1:NP_650163.2 Gene:CG4860 / 41480 FlyBaseID:FBgn0037999 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_957180.1 Gene:gcdha / 393860 ZFINID:ZDB-GENE-040426-1855 Length:441 Species:Danio rerio


Alignment Length:379 Identity:119/379 - (31%)
Similarity:188/379 - (49%) Gaps:17/379 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LSETHQILQKTCREFANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQAY 101
            |:|...:::.:.|.:...:|.|:....:|.|.:..|.:..:||||::..|: :.||.:|..|.||
Zfish    63 LTEEEIMIRDSFRTYCEDKLMPRIIMANRNEHFHREILNEMGELGVLGPTI-QGYGCAGTSYVAY 126

  Fly   102 AIGMEEVARGDAAVSIVMGV-NNLYLGAVQQHGTEQQKQDFLVPYTQGEHIAFYALSEPGNGSDA 165
            .:...||.|.|:....||.| ::|.:..:..:|||:|||.:|....:||.:..:.|:||.:|||.
Zfish   127 GLIAREVERVDSGYRSVMSVQSSLVMHPINAYGTEEQKQKYLPKLARGEILGCFGLTEPNHGSDP 191

  Fly   166 GAASTTAKLQGDS--YQINGTKAWISNSKEASGGIVFATVDKSMKHKGITAFLTPKDVPGLSIAK 228
            ....|.||....|  |.|:|||.||:||..|...:|:|..:...    :..|:..:.:.|||..|
Zfish   192 AGMETKAKYNPSSRTYSISGTKTWITNSPYADICVVWAKCEDGK----VRGFVLERGMKGLSTPK 252

  Fly   229 KESKMGMRATSTCQLVLEDVHVPRSRVL----GAAGDGFKIAMQSLDCGRIGIAAQATGIAQAAL 289
            .|.|..:||::|..:|:::|.||...:|    |.||     ....|:..|.|||..|.|.|:...
Zfish   253 IEGKFSLRASATGMIVMDEVEVPEENLLPHVSGLAG-----PFGCLNNARFGIAWGALGAAEFCF 312

  Fly   290 ELAVDYSQKRVAFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMAKLHA 354
            ..|..|:..|:.||..|||.||||:|:|||.|.:.|......:...|.|......:..::.|.::
Zfish   313 HAARQYTMDRIQFGVPLARNQLIQKKMADMLTEITIGLQSCLQLGRLIDQKKHTPEMISLLKRNS 377

  Fly   355 SESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQRIVIANAV 408
            ...|...|.|...:|||.|...:.....:..|......||||.:|..:::..|:
Zfish   378 CGKALDIARQARDMLGGNGIADEYHIIRHVMNLEAVNTYEGTHDIHALILGRAI 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4860NP_650163.2 CaiA 37..414 CDD:224871 119/379 (31%)
SCAD_SBCAD 39..410 CDD:173847 118/377 (31%)
gcdhaNP_957180.1 GCD 51..437 CDD:173840 119/379 (31%)
CaiA 63..437 CDD:224871 119/379 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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