DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4860 and Gcdh

DIOPT Version :9

Sequence 1:NP_650163.2 Gene:CG4860 / 41480 FlyBaseID:FBgn0037999 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_001102366.1 Gene:Gcdh / 364975 RGDID:1308829 Length:447 Species:Rattus norvegicus


Alignment Length:379 Identity:113/379 - (29%)
Similarity:188/379 - (49%) Gaps:17/379 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 LSETHQILQKTCREFANAELAPKARHHDREELYPAEQVRRLGELGLMSVTVREEYGGSGLDYQAY 101
            |:...::::.|.|.:....|..:....:|.|::..:.|..:||||::..|:: .||.:|:...||
  Rat    69 LTADEKLIRDTFRNYCQERLMSRILLANRNEVFHRDIVYEMGELGVLGPTIK-GYGCAGVSSVAY 132

  Fly   102 AIGMEEVARGDAAVSIVMGV-NNLYLGAVQQHGTEQQKQDFLVPYTQGEHIAFYALSEPGNGSDA 165
            .:...|:.|.|:....:|.| ::|.:..:..:|:|:|:|.:|....:||.:..:.|:||.:|||.
  Rat   133 GLLTRELERVDSGYRSMMSVQSSLVMHPIYTYGSEEQRQKYLPRLAKGELLGCFGLTEPNHGSDP 197

  Fly   166 GAASTTAK--LQGDSYQINGTKAWISNSKEASGGIVFATVDKSMKHKGITAFLTPKDVPGLSIAK 228
            |:..|.|:  ....||.::|||.||:||..|...:|:|..:.:.    |..||..|.:.|||..:
  Rat   198 GSMETRARHNPSNKSYTLSGTKTWITNSPVADLFVVWARCEDNC----IRGFLLEKGMRGLSAPR 258

  Fly   229 KESKMGMRATSTCQLVLEDVHVPRSRVL----GAAGDGFKIAMQSLDCGRIGIAAQATGIAQAAL 289
            .|.|..:||::|..::::.|.||...||    ..||     ....|:..|.||.....|.|:..|
  Rat   259 IEGKFSLRASATGMIIMDSVEVPEENVLPNVSSLAG-----PFGCLNTARYGITWGVLGAAEFCL 318

  Fly   290 ELAVDYSQKRVAFGKHLARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMAKLHA 354
            ..|..|:..|:.||..|||.||:|:|||||.|.:.:......:...|||......:..::.|.:.
  Rat   319 HTARQYALDRIQFGVPLARNQLVQKKLADMLTEITLGLHACLQLGRLKDQDKATPEMVSLLKRNN 383

  Fly   355 SESATFCAHQCIQILGGMGYTTDLPAELYYRNARVTEIYEGTSEIQRIVIANAV 408
            ...|...|.|...||||.|.:.:.....:..|......||||.:|..:::..|:
  Rat   384 CGKALDIARQARDILGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAI 437

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4860NP_650163.2 CaiA 37..414 CDD:224871 113/379 (30%)
SCAD_SBCAD 39..410 CDD:173847 112/377 (30%)
GcdhNP_001102366.1 GCD 57..443 CDD:173840 113/379 (30%)
CaiA 69..443 CDD:224871 113/379 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D589058at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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