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Protein Alignment CG4860 and Acadl

DIOPT Version :9

Sequence 1:	NP_650163.2	Gene:	CG4860 / 41480	FlyBaseID:	FBgn0037999	Length:	415	Species:	Drosophila melanogaster
Sequence 2:	NP_036951.1	Gene:	Acadl / 25287	RGDID:	2011	Length:	430	Species:	Rattus norvegicus

Alignment Length:	430	Identity:	137/430 - (31%)
Similarity:	211/430 - (49%)	Gaps:	28/430 - (6%)

- Green bases have known domain annotations that are detailed below.

  Fly     4 LIRVARTLGQRS------------SGAWSARIIAGGNR---GIACLAALSETHQILQKTCREFAN 53
            |:|..|.|..||            ||| .||:.....:   .|......|..|.|.:::.|:|..
  Rat     6 LLRSLRVLSARSATLPPPSARCSHSGA-EARLETPSAKKLTDIGIRRIFSSEHDIFRESVRKFFQ 69

  Fly    54 AELAPKARHHDREELYPAEQVRR-----LGELGLMSVTVREEYGGSGLDYQAYAIGMEEVARGDA 113
            .|:.|   :|  ||...|.:|.|     .|:.||:.:.:.|::||.|.|..:.|:..||.|..:.
  Rat    70 EEVIP---YH--EEWEKAGEVSRELWEKAGKQGLLGINIAEKHGGIGGDLLSTAVTWEEQAYSNC 129

  Fly   114 AVSIVMGVNNLYLGAVQQHGTEQQKQDFLVPYTQGEHIAFYALSEPGNGSDAGAASTTAKLQGDS 178
            ........:::.:..:..:||::|.:.|:...|.|:.|...|::|||.|||.....|.||..|..
  Rat   130 TGPGFSLHSDIVMPYIANYGTKEQIEQFIPQMTAGKCIGAIAMTEPGAGSDLQGVRTNAKRSGSD 194

  Fly   179 YQINGTKAWISNSKEASGGIVFATVDKSMKH--KGITAFLTPKDVPGLSIAKKESKMGMRATSTC 241
            :.:||:|.:|:|...:...||.|..::..:.  .||:.||....:.|....||..||||:|..|.
  Rat   195 WILNGSKVFITNGWLSDLVIVVAVTNREARSPAHGISLFLVENGMKGFIKGKKLHKMGMKAQDTA 259

  Fly   242 QLVLEDVHVPRSRVLGAAGDGFKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQKRVAFGKHL 306
            :|..|||.:|.|.:||....||...||.|...|:.||..|....:...|...:|.::|.||||.:
  Rat   260 ELFFEDVRLPASALLGEENKGFYYLMQELPQERLLIADLAISACEFMFEETRNYVRQRKAFGKTV 324

  Fly   307 ARLQLIQQKLADMATRVEISRLLTWRAAWLKDNGLPITKEAAMAKLHASESATFCAHQCIQILGG 371
            |.:|.:|.|||::.|.:.::|........|.:.....:..|:|||..|||.....|:||:|:.||
  Rat   325 AHIQTVQHKLAELKTNICVTRAFVDSCLQLHETKRLDSASASMAKYWASELQNTVAYQCVQLHGG 389

  Fly   372 MGYTTDLPAELYYRNARVTEIYEGTSEIQRIVIANAVLRE 411
            .||..:.|....|.:|||..||.||:||.:.:||..::.:
  Rat   390 WGYMWEYPIAKAYVDARVQPIYGGTNEIMKELIARQIVSD 429

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.