DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4860 and acox-1.4

DIOPT Version :9

Sequence 1:NP_650163.2 Gene:CG4860 / 41480 FlyBaseID:FBgn0037999 Length:415 Species:Drosophila melanogaster
Sequence 2:NP_493264.1 Gene:acox-1.4 / 173164 WormBaseID:WBGene00008567 Length:662 Species:Caenorhabditis elegans


Alignment Length:462 Identity:94/462 - (20%)
Similarity:167/462 - (36%) Gaps:122/462 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LAALSETHQILQKTCREFANA-----ELAPKARHHDREELYPAEQVRRLGE----LGLMSVTVRE 89
            :||:....:.|.:..||.:.|     |||      |.:.....:::.::.|    |.:::..:|:
 Worm    29 MAAVIYGSEKLARRRREISEAVSKIPELA------DTQPFPFMDRLEKITEGSRKLEVLNNNIRD 87

  Fly    90 --EYGGSGLDYQAY--AIGME-------EVARGDAAVSIVMGVNNLYLGAVQQHGTEQQKQDFLV 143
              :|..:|.....|  ..|||       ||               :::.|:....:::|::.:|.
 Worm    88 IIDYDDNGERLHIYQEVTGMEGHPLALHEV---------------MFIPALVSQASKEQQEKWLG 137

  Fly   144 PYTQGEHIAFYALSEPGNGSDAGAASTTAKLQGDSYQI------NGTKAWISNSKEASGGIVFAT 202
            ...:.|.|..||.:|.|:|::.....|||....|:.:.      .....|...:...|.......
 Worm   138 RARRREIIGCYAQTEMGHGTNLRKLETTATYFPDTQEFVLNTPTTTALKWWPGALGKSSNYAVVV 202

  Fly   203 VDKSMKHK--GITAFL-------TPKDVPGLSIAKKESKMGMRATSTCQLVLEDVHVPRSRVL-- 256
            ||..:|.|  |...|:       |...:.|:.:.....||.........|..:...|||:.:|  
 Worm   203 VDMIIKGKSYGPHPFMVQLRDEKTHIPLKGIVVGDIGPKMSFNGGDNGFLGFDKFRVPRTNLLMR 267

  Fly   257 --GAAGDG-------FKIAMQSLDCGRIGIAAQATGIAQAALELAVDYSQ-KRVAFGKHLAR--- 308
              ....||       .|:...::...|..:|.....:...||.:||.||. :|..|.::..:   
 Worm   268 HVRVEADGTYVKPPHAKVNHSAMVHVRSHMATGQGALLAQALIIAVRYSAVRRQGFLENKTQEVK 332

  Fly   309 ---LQLIQQKL--------ADMATRVEISRLLTWRAAWLKDNGLPITKEAAMAKLHASESA--TF 360
               .|..|.:|        |.:.|..|...|.   :..|||  :.:...:.||.|||..|.  :.
 Worm   333 VLDYQTQQHRLFPSLARAYAFIFTGFETIHLY---SQLLKD--VDMGNTSGMADLHALTSGLKSV 392

  Fly   361 CAHQ-----------CIQILGGMGYTTDLPAELYYRNARVTEI---------YEGTSEIQRIVIA 405
            ..||           |    ||.||:         ..:.::||         |||.:.:..:.:|
 Worm   393 VTHQTGEGIEQARMAC----GGHGYS---------MASYISEIYGIAIGGCTYEGENMVMLLQLA 444

  Fly   406 NAVLREL 412
            ..:::.:
 Worm   445 RYLVKSV 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4860NP_650163.2 CaiA 37..414 CDD:224871 92/459 (20%)
SCAD_SBCAD 39..410 CDD:173847 92/453 (20%)
acox-1.4NP_493264.1 PLN02443 9..659 CDD:178062 94/462 (20%)
ACAD 13..636 CDD:299127 94/462 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163694
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1960
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.740

Return to query results.
Submit another query.