DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4830 and CMR2

DIOPT Version :9

Sequence 1:NP_650160.1 Gene:CG4830 / 41477 FlyBaseID:FBgn0037996 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_014736.1 Gene:CMR2 / 854260 SGDID:S000005619 Length:1648 Species:Saccharomyces cerevisiae


Alignment Length:626 Identity:129/626 - (20%)
Similarity:201/626 - (32%) Gaps:230/626 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SKLPCSYDAENKIWKGIPQNNPFKP------------------ETSLGRIIFKNMRNWPKNVCQI 48
            |.||.|.|....:...:  .||..|                  ..||..|:.....::......|
Yeast   119 SSLPGSSDENGSVKDAV--YNPMIPLLPRHTGAENTSSGDSAMTDSLPLILRGRFEHYDGQTAMI 181

  Fly    49 S-DSEGVEVTFGQALTW------AIRIAQQLKSRGLDHKDIIGISARNTTYIMPTAVA---CFFH 103
            | :|:|.| ||   :||      |.|:|.:|....|...|.| :...|...::...:|   ||..
Yeast   182 SINSKGKE-TF---ITWDKLYLKAERVAHELNKSHLYKMDKI-LLWYNKNDVIEFTIALLGCFIS 241

  Fly   104 GTPFQSANPI-LEESTLKHLYNISKPK----IIFTDADH--YDKLYSATSAFKPEIILTTGTKDG 161
            |   .:|.|: .|..:|:.:..|.|..    ::.::|.|  .|.|||:::..|.:::     |:.
Yeast   242 G---MAAVPVSFETYSLREILEIIKVTNSKFVLISNACHRQLDNLYSSSNHSKVKLV-----KND 298

  Fly   162 V------LSIQDLLAPTKT---------------EFFYQPTPLKEGPSQTVAILTSSGTT----- 200
            |      :...||...||.               ||...|.....|......||.:...|     
Yeast   299 VFQQIKFVKTDDLGTYTKAKKTSPTFDIPNISYIEFTRTPLGRLSGVVMKHNILINQFETMTKIL 363

  Fly   201 ---GMP--------------KAVCISNDILTQETVFVNGYDT-----IFISASLDWITG-LWATI 242
               .||              |.:..:|    ...|.:|..|.     :.:....:..|| |..:|
Yeast   364 NSRSMPHWKQKSQSIRKPFHKKIMATN----SRFVILNSLDPTRSTGLIMGVLFNLFTGNLMISI 424

  Fly   243 FSTV----NGCTRIISSKPFAADYFV------------YLVS-------KYSITYALIPPEHC-- 282
            .|::    .|...||..  |.||..:            ||.:       |:.|.::.|  :.|  
Yeast   425 DSSILQRPGGYENIIDK--FRADILLNDQLQLKQVVINYLENPESAFSKKHKIDFSCI--KSCLT 485

  Fly   283 -CSLLDCPTATP------EKLG----------SLTKLNFGG---------GRMTQATVERVK--- 318
             |:.:|...:..      :.||          .||.|:|||         |.:....:...|   
Yeast   486 SCTTIDTDVSEMVVHKWLKNLGCIDAPFCYSPMLTLLDFGGIFISIRDQLGNLENFPIHNSKLRL 550

  Fly   319 ---------KLAPNGV-------LNSSYGMTEVGFIVFNHGHLKLTAAGNPLPGIQVKIVDDDGN 367
                     ||..|.|       :|||....:         :|||...|.|:|.|.:.:|:.|.|
Yeast   551 QNELFINREKLKLNEVECSITAMINSSSSFKD---------YLKLETFGFPIPDITLCVVNPDTN 606

  Fly   368 QLGVNQT-GEIIVHNGFSWNGYFADPEATKAMQDEEGWFHTGDMGYFDEDDYLYMTDR------- 424
            .|..:.| |||                          |..:..:     .|..|..|:       
Yeast   607 TLVQDLTVGEI--------------------------WISSNHI-----TDEFYQMDKVNEFVFK 640

  Fly   425 ----KKEVLKWKGLQMWPAE-VEAVIDELPEVKRVCVIGVY 460
                ..|:..|...:|...| .:||.::|..:..:|....|
Yeast   641 AKLNYSEMFSWAKYEMPTNEKSQAVTEQLDTILNICPANTY 681

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4830NP_650160.1 CaiC 18..529 CDD:223395 124/610 (20%)
AFD_class_I 46..518 CDD:302604 118/564 (21%)
CMR2NP_014736.1 DMAP_binding 5..121 CDD:368923 1/1 (100%)
AFD_class_I 179..893 CDD:418409 118/564 (21%)
Dip2 1004..1626 CDD:341231
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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