DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4830 and 4CL1

DIOPT Version :9

Sequence 1:NP_650160.1 Gene:CG4830 / 41477 FlyBaseID:FBgn0037996 Length:534 Species:Drosophila melanogaster
Sequence 2:NP_175579.1 Gene:4CL1 / 841593 AraportID:AT1G51680 Length:561 Species:Arabidopsis thaliana


Alignment Length:560 Identity:155/560 - (27%)
Similarity:252/560 - (45%) Gaps:69/560 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SKLPCSYDAENKIWKGIPQNNPFKPETSLGRIIFKNMRNWPKNVCQISDSEGVEVTFGQALTWAI 66
            ||||..|         ||.:      .||...||:|:..:....|.|:...|...|:......:.
plant    27 SKLPDIY---------IPNH------LSLHDYIFQNISEFATKPCLINGPTGHVYTYSDVHVISR 76

  Fly    67 RIAQQLKSRGLDHKDIIGISARNTTYIMPTAVACFFHGTPFQSANPILEESTLKHLYNISKPKII 131
            :||......|::..|::.:...|....:.:.:|..|.|....:|||....:.:......|..|:|
plant    77 QIAANFHKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLI 141

  Fly   132 FTDADHYDKLYSATSAFKPEIILTTGTKDGVLSI-----QDLLAPTK----TEFFYQPTPLKE-- 185
            .|:|.:.||:       ||     ....|||:.:     :.:..|..    ||.....|...|  
plant   142 ITEARYVDKI-------KP-----LQNDDGVVIVCIDDNESVPIPEGCLRFTELTQSTTEASEVI 194

  Fly   186 -----GPSQTVAILTSSGTTGMPKAVCISN-DILTQETVFVNGY---------DTIFISASLDWI 235
                 .|...||:..||||||:||.|.::: .::|.....|:|.         |.|.....:..|
plant   195 DSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDGENPNLYFHSDDVILCVLPMFHI 259

  Fly   236 TGLWATIFSTVNGCTRIISSKPFAADYFVYLVSKYSITYA-LIPPEHCCSLLDCPTATPEK--LG 297
            ..|.:.:...:.....|:....|..:..:.|:.:..:|.| ::||   ..|....::..||  |.
plant   260 YALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPP---IVLAIAKSSETEKYDLS 321

  Fly   298 SLTKLNFGGGRMTQATVERVKKLAPNGVLNSSYGMTEVG-FIVFNHGH------LKLTAAGNPLP 355
            |:..:..|...:.:...:.|....||..|...|||||.| .:..:.|.      :|..|.|..:.
plant   322 SIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVR 386

  Fly   356 GIQVKIVD-DDGNQLGVNQTGEIIVHNGFSWNGYFADPEATKAMQDEEGWFHTGDMGYFDEDDYL 419
            ..::|||| |.|:.|..||.|||.:.......||..:|.||....|::||.||||:|..|:||.|
plant   387 NAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDEL 451

  Fly   420 YMTDRKKEVLKWKGLQMWPAEVEAVIDELPEVKRVCVIGVYDETQGDVPGALVVREDNATLTAQQ 484
            ::.||.||::|:||.|:.|||:||::...|::..|.|:.:.:|..|:||.|.||:..::.|:...
plant   452 FIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDD 516

  Fly   485 VIDHVAKRLPDIQKQLRAGVQFADEIPQNHNGKVVRRYAR 524
            |...|:|::. ..|::.. |.|.:.||:..:||::|:..|
plant   517 VKQFVSKQVV-FYKRINK-VFFTESIPKAPSGKILRKDLR 554

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4830NP_650160.1 CaiC 18..529 CDD:223395 150/544 (28%)
AFD_class_I 46..518 CDD:302604 140/508 (28%)
4CL1NP_175579.1 PLN02246 16..560 CDD:215137 155/560 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0318
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D683933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24096
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.920

Return to query results.
Submit another query.