DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4830 and Acsl4

DIOPT Version :9

Sequence 1:NP_650160.1 Gene:CG4830 / 41477 FlyBaseID:FBgn0037996 Length:534 Species:Drosophila melanogaster
Sequence 2:XP_006257376.1 Gene:Acsl4 / 113976 RGDID:69401 Length:711 Species:Rattus norvegicus


Alignment Length:615 Identity:145/615 - (23%)
Similarity:224/615 - (36%) Gaps:152/615 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 PQNNPFKPETSLGRIIFKNMR--NWPKNVCQISDSEGVEVTFGQALTWAIRIAQQLKSRGLDHKD 81
            |....||      ::|..|.:  |:.:..|::::       ||..||          :.||..|:
  Rat   110 PNGKVFK------KLILGNYKWINYLEVNCRVNN-------FGSGLT----------ALGLKPKN 151

  Fly    82 IIGISARNTTYIMPTAVACFFHGTPFQSANPILEESTLKHLYNISKPKIIFTDADHYD-KLYSA- 144
            .|.|........|..|..||.:..|..:....|.:..:.|..|.|:...:.|..:..: ||.:| 
  Rat   152 TIAIFCETRAEWMIAAQTCFKYNFPLVTLYATLGKEAVVHGLNESEASYLITSVELLESKLKAAL 216

  Fly   145 --TSAFKPEIILTTGTKD-----------GVLSIQDLLAPTKTEFFYQPTPLKEGPSQTVAILTS 196
              .:..|..|.:...|.:           .:.|:::|  .:|.|....| |.:..||....::.:
  Rat   217 LDINCVKHIIYVDNKTINRAEYPEGLEIHSMQSVEEL--GSKPENSSIP-PSRPTPSDMAIVMYT 278

  Fly   197 SGTTGMPKAVCI--SNDI--LTQETVFVNGY---DTIFISASLDWITGLWATIFSTVNGCTRIIS 254
            ||:||.||.|.:  ||.|  :|.:...:.|.   ||......|..:..|.|.|.....|| ||..
  Rat   279 SGSTGRPKGVMMHHSNLIAGMTGQCERIPGLGPKDTYIGYLPLAHVLELTAEISCFTYGC-RIGY 342

  Fly   255 SKPFAADYFVYLVSKYSITYALIPPEHCCSLLDCPT---ATPEKLGSLTK--------LNFGGGR 308
            |.|.........:.|.|        :..|::|. ||   |.||.:..:.|        :|:    
  Rat   343 SSPLTLSDQSSKIKKGS--------KGDCTVLK-PTLMAAVPEIMDRIYKNVMSKVQEMNY---- 394

  Fly   309 MTQAT---------VERVKK--------------------------------LAPNG-------- 324
             .|.|         :|::||                                |:|..        
  Rat   395 -IQKTLFKIGYDYKLEQIKKGYDAPLCNLILFKKVKALLGGNVRMMLSGGAPLSPQTHRFMNVCF 458

  Fly   325 --VLNSSYGMTE---VGFIV----FNHGHLKLTAAGNPLPGIQVKIVDDDGNQLGV----NQTGE 376
              .:...||:||   .|.:.    :..|.:     |.||...::|:.|.......|    |..||
  Rat   459 CCPIGQGYGLTESCGAGTVTEVTDYTTGRV-----GAPLICCEIKLKDWQEGGYTVHDKPNPRGE 518

  Fly   377 IIVHNGFSWNGYFADPEATKA--MQDEEG--WFHTGDMGYFDEDDYLYMTDRKKEVLKWK-GLQM 436
            |::.......|||.:.|.|..  ..||.|  ||.|||:|.|..|..|.:.||||:::|.: |..:
  Rat   519 IVIGGQNISMGYFKNEEKTAEDYSVDENGQRWFCTGDIGEFHPDGCLQIIDRKKDLVKLQAGEYV 583

  Fly   437 WPAEVEAVIDELPEVKRVCVIGVYDETQGDVPGALVVREDNATLTAQQVIDHVAKRLPDIQKQLR 501
            ...:|||.:...|.:..:|.....|  |..|...:|..:...||.|||  ..|.....||.....
  Rat   584 SLGKVEAALKNCPLIDNICAFAKSD--QSYVISFVVPNQKKLTLLAQQ--KGVEGSWVDICNNPA 644

  Fly   502 AGVQFADEIPQNHNGKVVRRYARDLFVALS 531
            ...:...||.:..|...:.|:...:.|.||
  Rat   645 MEAEILKEIREAANAMKLERFEIPIKVRLS 674

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4830NP_650160.1 CaiC 18..529 CDD:223395 142/611 (23%)
AFD_class_I 46..518 CDD:302604 135/571 (24%)
Acsl4XP_006257376.1 LC_FACS_euk1 121..696 CDD:341294 141/598 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166342834
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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