DRSC/TRiP Functional Genomics Resources

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Protein Alignment Cpn and vwf

DIOPT Version :9

Sequence 1:NP_731674.1 Gene:Cpn / 41474 FlyBaseID:FBgn0261714 Length:864 Species:Drosophila melanogaster
Sequence 2:NP_001268918.1 Gene:vwf / 570643 ZFINID:ZDB-GENE-070103-1 Length:2812 Species:Danio rerio


Alignment Length:715 Identity:136/715 - (19%)
Similarity:218/715 - (30%) Gaps:235/715 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   146 PTP-AAVTPVVSPVIATPPVVPANTTVPVAAPVAAVPAAVPV------------VAPVLAPAVAP 197
            |.| ..:|..::|...||..:|.:|.||..|...|:..|..|            :..:....|..
Zfish  1221 PCPVTGLTSTLAPTTVTPTPLPFSTPVPADACDRAMDLAFLVDGSSALSEDDFSMIKLFILRVVE 1285

  Fly   198 AVAPVVAETPA---------------------PPPVAEI-----PVATIPECVAPLIPEVSVVAT 236
            ......|.|.|                     ...|.|:     .||.:.|.:..|...:.....
Zfish  1286 RFRMGSAHTRATVLLFHSGVKSYDMQVQKWIFKKMVREMRYTGGDVAFMDEAIKYLAVYIYDKNK 1350

  Fly   237 KPLAAAEPVVVAPPATETPV-------------VAPAAASPHVSVAPAVETAVVAP------VSA 282
            :..|....:::...|...|:             :...|..|.|::|...|.....|      ||:
Zfish  1351 REHAGRVAILLTASANPRPMRSTQRLLRKKDITILTVALGPDVNMAQVNEITKATPSSRAYVVSS 1415

  Fly   283 STEPPVAAATLTTAPETPALAPVVAESQVAANTVVATPPTPAPEPETIAPPVVAETPEVASVAVA 347
            .||....|.::|....|..|                 .|.|..:|.|..|...:.||...::   
Zfish  1416 VTELDDEALSITDYLCTLGL-----------------DPEPQKKPPTAKPSTTSVTPTTNAI--- 1460

  Fly   348 ETTPPVVPPVAA-----ESIPAPVVATTPVPATLAVTDPDV-----TASAVPE---------LPP 393
              |...:||.||     .|||.|  .||.||.|  ||..|:     .|:|..|         |..
Zfish  1461 --TKLTIPPTAAIVTAFPSIPTP--GTTLVPTT--VTTYDLVFLLENANATGEDGFNKTRDSLIN 1519

  Fly   394 VI---------------------------------------------------------APSPVP 401
            :|                                                         ..|...
Zfish  1520 IITSLDQKEAENLRITVMMYSVTVTVEISRMELHHREQVVQRMRQLRWTEGAEVNTGHAVQSVYE 1584

  Fly   402 SAVAETPVDLAPPVLPPVAAEPVPAVVAEETPETPAPASAPVTI---------AALDIPEVAPVI 457
            :...:|..| .|..|..:..:..|..|.:..|.:......|:.|         |.|..|:...::
Zfish  1585 TITTDTHSD-TPDQLVFLITQSPPTDVIQRPPSSTHKKIYPIGIGRKIRYEDLALLSFPDKPIML 1648

  Fly   458 AAPSDAPAEAP-------SAAAPIVSTPPTTASVPETTAPPAAVPTEPIDVSVLSEAA------- 508
            ..|||.....|       :...|::.|.|     |..|.||:...::|:||..|..|:       
Zfish  1649 DDPSDLRTLQPMLINISRTVRRPLLPTLP-----PRATLPPSVPCSKPMDVLFLLRASSGSQFED 1708

  Fly   509 IETPVAPPVEVT------TEVAVADVAPPEAAA---------DLIIEPVEPPAPIPDLLEQTTSV 558
            ::|.|...::.|      |:|||.......|.|         |.:::.:|      .|..:|.:.
Zfish  1709 LKTFVKTFIKSTNIGRNDTQVAVMVYGAKSAVAVTWRDEQTQDNLLKLLE------SLHGKTDNQ 1767

  Fly   559 P--------AVEAAESTSSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPV 615
            |        ||:.|.|::|          ...:..|:..|..:|........|.:....|..:.|
Zfish  1768 PRLGAALRLAVQTAVSSTS----------GARMGIPKAVVMVVTDRSIDSVQEAANEALTAGVSV 1822

  Fly   616 EAPVVIQEAVDAVEV-----PVTETSTSIPETTVEYPVAEKVLDPAITEAPVTTQEPDVANINDG 675
             .|:.:.:..|.:||     |..:.:..:..:| ||.::....|.:..:.......|.|...::|
Zfish  1823 -FPIGLGKQYDQIEVNTLAGPQAQENVILLGST-EYLLSMAAFDQSFPDKLCRAGPPGVCVDDEG 1885

  Fly   676  675
            Zfish  1886  1885

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
CpnNP_731674.1 rne <9..167 CDD:236766 6/21 (29%)
rne <109..300 CDD:236766 39/211 (18%)
rne <228..409 CDD:236766 48/275 (17%)
rne <331..594 CDD:236766 75/384 (20%)
rne <501..763 CDD:236766 40/210 (19%)
vwfNP_001268918.1 VWD 29..167 CDD:278521
C8 <227..284 CDD:214843
TIL 288..341 CDD:280072
VWC 343..>387 CDD:302663
VWD 381..534 CDD:278521
C8 573..641 CDD:285899
TIL 645..700 CDD:280072
TIL 760..818 CDD:280072
VWD 847..1003 CDD:214566
C8 1043..1112 CDD:285899
TIL 1131..1181 CDD:280072