DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cpn and Crim1

DIOPT Version :9

Sequence 1:NP_731674.1 Gene:Cpn / 41474 FlyBaseID:FBgn0261714 Length:864 Species:Drosophila melanogaster
Sequence 2:NP_001162574.1 Gene:Crim1 / 298744 RGDID:1308710 Length:1037 Species:Rattus norvegicus


Alignment Length:492 Identity:93/492 - (18%)
Similarity:143/492 - (29%) Gaps:158/492 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   406 ETPVDLAPPVLPPVAA--------------EPVPAVVAEETPETPAPASAPVTIAALDIPEVAPV 456
            |.|....||||.....              :...........|..|..:.||           |.
  Rat   594 EVPTSAGPPVLSGTCLSMDGHHHKNEESWHDGCRECYCHNGKEMCALITCPV-----------PA 647

  Fly   457 IAAPSDAPAE-APSAAAPIVSTPP--TTASVPETTAPPAAVPTEPIDVSVLSEAA-------IET 511
            ...|:..|.: .||.|...|...|  :|.|:.........|..|..::...::..       .||
  Rat   648 CGNPTIRPGQCCPSCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCET 712

  Fly   512 PVAPPVEVTTEVAVADVAPPEAAADLIIEPVEPPAPIPDLLEQTTSVPA---------VEAAEST 567
            .|.||:.........|...|:...|    |::|..      ....|||:         ..||||.
  Rat   713 EVCPPLLCQNPSRTQDSCCPQCTED----PLQPST------SHNESVPSYCRNDEGDIFLAAESW 767

  Fly   568 SSPIPETSLPPPNEAVASPEVAVAPITAPEPIPEPEPSLATPTEPIPVEAPVVIQEAVDAVEVPV 632
                             .|:|..:.:..       :.|::..:|..|..          |.|.||
  Rat   768 -----------------KPDVCTSCVCM-------DSSISCYSESCPSV----------ACERPV 798

  Fly   633 TETSTSIPETTVEYPVAEKVLDPAITEAPVTTQEPDVANINDGAPATEITTPAVEIVTAAAEVSD 697
            .......| ..:|..:.:||:.....:.....:..|:.:...        ...::..|..:.||.
  Rat   799 LRKGQCCP-YCLEDTIPKKVVCHFSGKTYADEERWDIDSCTH--------CYCLQGQTLCSTVSC 854

  Fly   698 TAIPLIDP--------PVPQEIAVAEIPETETKPAEVIVEQSTIPIEAPVPEVSKYAEPVISEAP 754
            ..:|..:|        |:..|:.|   ||....|.|....:..|.:|.|:       .|..||..
  Rat   855 PPLPCAEPIKVEGSCCPMCPEMYV---PEPTNVPIEKKNHRGEIDLEVPM-------WPTPSEND 909

  Fly   755 AAEVPITAG----DNPDNTSVGISEVVPTIAEKAVEEVPTSEIPEQSSSPSDSVPVAKITPLLRD 815
            ...:|...|    |..||..:.                     |.:.||....|||  :.|::  
  Rat   910 IIHLPRDMGHLQVDYRDNNRLH---------------------PSEDSSLDSIVPV--VVPII-- 949

  Fly   816 LQTTDVSLLAIAATLDAIGEKLKDQKARNQQVMDRLC 852
                 :.|..|.|.|      |.:||   :|.:..||
  Rat   950 -----ICLSIIIAFL------LINQK---KQWIPLLC 972

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CpnNP_731674.1 rne <9..167 CDD:236766
rne <109..300 CDD:236766
rne <228..409 CDD:236766 1/2 (50%)
rne <331..594 CDD:236766 41/220 (19%)
rne <501..763 CDD:236766 50/285 (18%)
Crim1NP_001162574.1 IB 37..>95 CDD:197525
VWC 336..390 CDD:214564
VWC 403..456 CDD:214564
Antistasin 567..592 CDD:280912
VWC 612..662 CDD:302663 8/60 (13%)
VWC 683..734 CDD:302663 9/50 (18%)
VWC 758..808 CDD:302663 14/84 (17%)
VWC 819..873 CDD:302663 7/61 (11%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1216
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.