DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr15 and dscama

DIOPT Version :9

Sequence 1:NP_001287299.1 Gene:dpr15 / 41473 FlyBaseID:FBgn0037993 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_021334866.1 Gene:dscama / 568643 ZFINID:ZDB-GENE-050310-7 Length:2025 Species:Danio rerio


Alignment Length:578 Identity:112/578 - (19%)
Similarity:180/578 - (31%) Gaps:195/578 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    54 PATTQMA-QTLDKASAFRPTMAAALDAAAPNRSSNNVAI-----NNISNNGDQRLRLTAALEANL 112
            |.|.::| ||..:.|      .|......|:...|.:.:     :.:......|..:|:. .|..
Zfish   125 PYTVRVADQTAMRGS------VAVFKCIIPSSVENYITVVSWERDTVPLVSGARFLITST-GALY 182

  Fly   113 IMSNRNVQEQHSYR-ITQDNATSAASIAPNGTAFGDAPSIPIGVAPATTTTIDPATTTPTTTTRR 176
            |:..:...|..:|| :|:...||....:.:...|          .||     ||:.:.|.     
Zfish   183 ILDVQKEDELFNYRCMTRHRYTSETRQSNSARLF----------VPA-----DPSNSAPA----- 227

  Fly   177 TTRRPVATTTLKPPPTIDDYQTIISQAGTHAYLPCNVKQLVKKPISWLRMRDGHILTVDQTTFIA 241
                           .:|.::.....|.....|||...........||:         :.....:
Zfish   228 ---------------ILDGFEKREVMASHRVELPCKASGHPAPKYRWLK---------NNRPLES 268

  Fly   242 DQRF-QSVFSPNPERWSLQIKYVQLKDEGTYECQV-STEPKASAIVHLRIVEPKTELIGESTRHV 304
            |.|| |||       ..|.|:..|..|.|:|.|:| ::...|..|..|.:.||...::  |.|.|
Zfish   269 DSRFRQSV-------TGLLIERAQPSDTGSYVCEVWNSYGNAEVIGRLTVKEPLKAVV--SPRKV 324

  Fly   305 K--AGSQVKLRCIISQALEPPLFINWFYNQKQIYLHNRRGWRTEIERIDLPAEVPTTSTTTTTTT 367
            |  .||||.|.|.::.:.|  ..::|:.|.               ::|:..|.:           
Zfish   325 KGSVGSQVSLSCSVTGSDE--FELSWYRNG---------------DKINTGANI----------- 361

  Fly   368 TTASTTTTTTSTTPATPSTTATGSTEGATSSETLNGLVTITRSYILDAISQND---------VSE 423
                                            .:||:  ...:.::|.::::|         .::
Zfish   362 --------------------------------RMNGI--NKENLVMDGMAKSDGGVYQCFSRKAK 392

  Fly   424 LGAAAGVAVATETSTAQLLTEVEATSSTSGTSTGAGLLASTSAAYAAGAAAGITTAATGDSAATA 488
            :.|...|.|..|..|.::|      |:.|....|.....|.:..........||           
Zfish   393 MSAQDFVQVILEDGTPKIL------SAFSEKVVGPNDFVSLTCHVKGTPQPAIT----------- 440

  Fly   489 ATTSAWLTTMDAEAATTAATTTTTMLPSSSFIKQITTASLIIPAVVKLDSGNYTCSPSNSAPRTI 553
                 |  |:|.|   ..|..:...:..|...:....:.|.|..:...|||.|.|:.:|||... 
Zfish   441 -----W--TLDDE---VVAKDSRHRIVHSITAEGNVVSYLNISHIQVRDSGVYRCTCNNSAGTV- 494

  Fly   554 VLHVLNGEYSASAIKSGS------------VSWSALIGCH--GY----LHWRNVSTLL 593
                   .|.|.....||            ..|...|.||  ||    :.|...|.||
Zfish   495 -------SYQARINVRGSADIRPMKNLTAIAGWDMYIHCHVIGYPYYSIKWFKNSNLL 545

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr15NP_001287299.1 IG_like 197..289 CDD:214653 23/93 (25%)
V-set 204..290 CDD:284989 22/87 (25%)
dscamaXP_021334866.1 Ig 124..217 CDD:325142 20/108 (19%)
I-set 236..311 CDD:254352 23/90 (26%)
IG_like 321..402 CDD:214653 20/142 (14%)
I-set 408..502 CDD:333254 25/128 (20%)
IGc2 524..579 CDD:197706 9/22 (41%)
Ig 614..679 CDD:319273
Ig_DSCAM 708..787 CDD:143211
Ig 805..898 CDD:325142
FN3 894..988 CDD:238020
FN3 995..1092 CDD:238020
fn3 1100..1186 CDD:306538
fn3 1199..1282 CDD:306538
Ig 1312..1377 CDD:319273
fn3 1405..1471 CDD:306538
FN3 1492..1563 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.