DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr15 and robo4

DIOPT Version :9

Sequence 1:NP_001287299.1 Gene:dpr15 / 41473 FlyBaseID:FBgn0037993 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_689255.3 Gene:robo4 / 560765 ZFINID:ZDB-GENE-020809-1 Length:1134 Species:Danio rerio


Alignment Length:559 Identity:106/559 - (18%)
Similarity:176/559 - (31%) Gaps:167/559 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 RPVATTTLKPPPTIDDYQTIISQAGTHAYLPCNVKQLVKKPISWLR----MRDGHILTVDQTTFI 240
            |....:.|..|..:...:.:..|.|..|...|.........|.|.|    :.:|..|.       
Zfish   255 RAARLSVLAKPVLLRKPEDVSVQLGESAQFFCEADGDPMPSIEWSREQGPLPNGRYLI------- 312

  Fly   241 ADQRFQSVFSPNPERWSLQIKYVQLKDEGTYECQVSTEPKASAIVHLRIVEP------------- 292
                       ||:. ||||.||..:|.|.|.|.|..:...|......:||.             
Zfish   313 -----------NPDH-SLQIHYVTAQDMGRYSCTVENKLGVSVASAQLLVEDAGGTRLRDLHKEL 365

  Fly   293 ------------------------KTELIGESTRHVKAGSQVKLRCIISQALEPPLFINWFYN-- 331
                                    |.:..| |..|...|.:|..|.::      |...:|...  
Zfish   366 SALRVSLENVTVMSTASNMSQVMWKLQSFG-SQPHYLEGFEVLYRSLL------PASSDWTAQRV 423

  Fly   332 -QKQIYLH---NRRGWRTEIE----------------RIDLPAEVPTTSTTTTTTTTTASTTTTT 376
             |..::.|   .:||::.|.:                .:.:|..||:.:....:.|..|....|.
Zfish   424 PQPSLHTHVGPLKRGYKYEFKVRPYGSSLYGRESNTRHLRVPEIVPSAAPQDVSITMPAERNDTV 488

  Fly   377 TSTTPATPSTTATGSTEG-----ATSSETLNGLVTI---TRSYILDAISQNDVSELGAAA--GVA 431
            ..:....|.....|..:|     ..|.|..:...|:   |.|..:..:..:.:..:..||  |..
Zfish   489 HLSWEPPPHDAHNGIIQGYQVWCVESEEQTSFNWTVDSGTHSIEIFTLLPSRLYWVTVAAVNGAG 553

  Fly   432 VATETSTAQLLTE--VEATSSTSGT-----------------STGAGL---LASTSA-------- 466
            |..::...:||.|  :|||...:|.                 |.|..|   |..|:.        
Zfish   554 VGVQSDPYKLLIESRLEATPYQTGILSMSHFVSVIKEPVFIGSVGTLLWCVLMITAVFLYRRHIR 618

  Fly   467 -AYAAGAAAGITTAATGD---SAATAATTSAWLTTMDAEAATTAATTTTTMLPS--SSFIKQITT 525
             |..:|.::|:....:.|   ....||..|.|::. .....:.:........||  :|.:::.| 
Zfish   619 PANPSGKSSGLYRLESEDLIIKHRMAAPDSPWISG-GWRPGSNSEPKQGLWTPSQENSGLRRTT- 681

  Fly   526 ASLIIPAVVKLDSGNYTCSPSNSA----PRTIVLHVLNGEYSASAIKSGSVSWSALIGC----HG 582
                :|..||.|.     :|..||    |....::   |.:......:|..::::...|    ||
Zfish   682 ----LPITVKKDP-----NPLRSAVPIVPDNCGVY---GTFYVDLTGNGLKTFNSPGRCPRMPHG 734

  Fly   583 YLHWRNVSTLLTLLWIIKFALARDI----------CQPN 611
            ....:|..|:.....|:|.|:.|::          .|||
Zfish   735 NSQLQNSETIRITEPIVKTAVVRELQALPWKRTLPAQPN 773

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr15NP_001287299.1 IG_like 197..289 CDD:214653 23/95 (24%)
V-set 204..290 CDD:284989 22/89 (25%)
robo4XP_689255.3 Ig1_Robo 70..169 CDD:143317
I-set 71..168 CDD:254352
I-set 175..261 CDD:254352 1/5 (20%)
Ig2_Robo 177..261 CDD:143201 1/5 (20%)
I-set 265..350 CDD:254352 24/103 (23%)
Ig 282..350 CDD:299845 21/86 (24%)
FN3 373..448 CDD:214495 14/81 (17%)
FN3 472..560 CDD:238020 15/87 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.