DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr15 and itgb4

DIOPT Version :9

Sequence 1:NP_001287299.1 Gene:dpr15 / 41473 FlyBaseID:FBgn0037993 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:660 Identity:124/660 - (18%)
Similarity:205/660 - (31%) Gaps:231/660 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 ELAKMPRRLILLALLICLPAIRGQAEETSILNSNGTNGRAFQRTQS----------RREALIPAT 56
            :|.:.||.:|.:|          ...|:|::....:. :.|..|.|          .||.  |||
Zfish  1092 KLGRYPRTVITIA----------DKPESSVMAFKKST-QTFSTTDSLYTIPVERTGNRET--PAT 1143

  Fly    57 ----TQMAQTLDKASAFRPTMAAALDAAAPNRSSNNVAIN-------------NI-----SNNGD 99
                |..|...|.:|..:         .||..:..|:.||             |:     |||..
Zfish  1144 VHWRTNKASRFDISSPLK---------FAPGEAEKNILINPRTHPSPIIPEKFNLELLDPSNNAI 1199

  Fly   100 QRLRLTAALEANLIMSN-----RNVQEQHSYRITQDNATS------------AASIAP------- 140
            ...|.|    ..:|:::     :|...|....:|| .|||            |.:..|       
Zfish  1200 IGKRKT----TEVIVTDGRGDGKNQDFQKMEYVTQ-TATSPGGRLYSPANIKAVATGPKNIRLNW 1259

  Fly   141 ------NG-----TAFGD----APSIPIGVAPATTTTIDPATTTPTTTTRRTTRRPVATTTLKPP 190
                  ||     ..:||    |..:.:....|..|.:||..                       
Zfish  1260 KPSQNANGYKVKYWIYGDPEDKAKFMDVKTPQAELTNLDPYC----------------------- 1301

  Fly   191 PTIDDY---------------------QTIISQAGTHAYLPCNVKQLVKKPISWLRMRDGH-ILT 233
                ||                     ||:....|....|..||.......:||....:.: |:|
Zfish  1302 ----DYEMRVCGYNALGDGNYSDIIQCQTLEDIPGEPGRLAFNVISPTVTQVSWAEPAEANGIIT 1362

  Fly   234 VDQTTFIADQRFQSVFSP-------NPERWSLQIKYVQLKDEGTYECQVSTE----PKASAIVHL 287
            ..:..::.....:....|       ||::..|.|:.:|......|:.:.|.:    |...|.::|
Zfish  1363 GYEVIYMPINEDKKPTGPPKKVMIDNPKKRMLLIENLQPSQTYCYKVRASNKVGWGPYREATINL 1427

  Fly   288 RI---------VEPKTELI----GESTRHVKAGSQVKLRCIISQALEPPL-------FINWFYNQ 332
            ..         :.|...::    ||........|...||...| :|.|.:       |:|..:.|
Zfish  1428 ASQPTRPMSIPIIPDIPIVDAEAGEEYDSYLMYSNEVLRSPTS-SLRPSVTDLSDDQFVNGKWEQ 1491

  Fly   333 KQIYLHNRRGWRTEIERIDLPAEVPTTSTTTTTTTTTASTTTTTTSTTPATPSTTATGSTEGATS 397
            ..::.....|               :.|...::::||.|.:|..|:.|..:.:||......|:| 
Zfish  1492 NFLFPGGGGG---------------SLSRNISSSSTTYSHSTPRTNVTNNSSTTTYISGKGGST- 1540

  Fly   398 SETLNGLVTITRSYILDAISQNDVSELGAAAGVAVATETSTAQLLTEVEAT--SSTSGTSTGAGL 460
                      |..|        ||.:.|......:..:.|..:..||.:..  |...|..:| ||
Zfish  1541 ----------THRY--------DVRDGGLLKEDVILRKRSENRHYTEGDGVRDSIVMGNLSG-GL 1586

  Fly   461 LASTSAAYAAGAAAGITTAATGDSAATAATTSAWLTTMDAEAATTAATTTTTMLPSSSFIKQI-- 523
            |.:      .|.::...|.:|..|.::.|.|       .:|....|.....::|..|.|...:  
Zfish  1587 LDN------LGVSSFSQTTSTSYSLSSRART-------QSEDINDALLNLDSVLQESRFTPGVPA 1638

  Fly   524 TTASLIIPAV 533
            |.:.|:..|:
Zfish  1639 TPSRLVFSAL 1648

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr15NP_001287299.1 IG_like 197..289 CDD:214653 21/103 (20%)
V-set 204..290 CDD:284989 19/106 (18%)
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020 13/110 (12%)
FN3 1331..1420 CDD:238020 16/88 (18%)
fn3 1640..1720 CDD:278470 2/9 (22%)
fn3 1751..1835 CDD:278470
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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