DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr15 and Crtam

DIOPT Version :9

Sequence 1:NP_001287299.1 Gene:dpr15 / 41473 FlyBaseID:FBgn0037993 Length:662 Species:Drosophila melanogaster
Sequence 2:XP_038936973.1 Gene:Crtam / 300649 RGDID:1304602 Length:389 Species:Rattus norvegicus


Alignment Length:302 Identity:59/302 - (19%)
Similarity:107/302 - (35%) Gaps:59/302 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   197 QTIISQAGTHAYLPCNVKQLVKK-PISWLRMRDGHILTVDQTTFIADQRFQSVFSPNPERWSLQI 260
            :||..:.|....|.| |..|.|. .:.|| ...|..:.::|...:...::| :...:..:.|:.:
  Rat    22 ETIEVEEGQTLNLTC-VTSLTKNASLQWL-APSGFTIFLNQHPALKSSKYQ-LLHHSATQLSVSV 83

  Fly   261 KYVQLKDEGTYEC-----QVSTEPKASAIVHLRIVEPKTELIGESTRHVKAGSQVKLRCIISQAL 320
            ..|.|::||.|.|     .|.|: :....|.:...:|..|.:  ..|.......|.|:|...:: 
  Rat    84 SNVTLREEGVYTCLHYGSSVKTK-QVRVTVLVTPFQPTVEAL--VLRRQNGEKSVVLKCSTERS- 144

  Fly   321 EPPLFINWFYNQKQIYLHNRRGWRTEIERIDLPAEVPTTSTTTTTTTTTASTTTTTTSTT----- 380
            :||..:.|..           |...||:. :|..|.......:.||:|....:....||.     
  Rat   145 KPPPQVTWLL-----------GGGLEIDG-ELHHEFEADGKISNTTSTLVVRSYGKNSTVHCVIR 197

  Fly   381 ------------------PATPSTTATGSTEGATSSETLNGLVTITRSYILDAISQNDVSELGAA 427
                              .|...||:....:.:.||:.|....:........::.:.|..|    
  Rat   198 HKGLQGRKLVAPFRFGDLVADQETTSEAPEQSSLSSQALQQPTSTVSMMENSSMPETDKEE---- 258

  Fly   428 AGVAVATETSTAQLLTEVEATSSTSGTS-TGAGLLASTSAAY 468
                  .|.:|...:...||::..||.: ..:|:|..|..::
  Rat   259 ------KEHATQDPVMITEASAQHSGLARRNSGILLLTLVSF 294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr15NP_001287299.1 IG_like 197..289 CDD:214653 23/97 (24%)
V-set 204..290 CDD:284989 21/91 (23%)
CrtamXP_038936973.1 Ig 22..112 CDD:416386 22/93 (24%)
FR1 22..37 CDD:409353 5/15 (33%)
Ig strand A' 22..28 CDD:409353 2/5 (40%)
Ig strand B 30..38 CDD:409353 2/8 (25%)
CDR1 38..43 CDD:409353 1/4 (25%)
FR2 44..51 CDD:409353 2/7 (29%)
Ig strand C 44..50 CDD:409353 2/6 (33%)
CDR2 52..63 CDD:409353 2/10 (20%)
Ig strand C' 54..58 CDD:409353 0/3 (0%)
Ig strand C' 60..63 CDD:409353 1/2 (50%)
FR3 64..99 CDD:409353 8/35 (23%)
Ig strand D 68..75 CDD:409353 1/7 (14%)
Ig strand E 78..84 CDD:409353 1/5 (20%)
Ig strand F 91..99 CDD:409353 4/7 (57%)
CDR3 100..103 CDD:409353 0/2 (0%)
Ig strand G 103..112 CDD:409353 2/9 (22%)
FR4 105..112 CDD:409353 1/7 (14%)
C2-set_2 119..205 CDD:400489 19/100 (19%)
Ig strand B 135..142 CDD:409353 3/6 (50%)
Ig strand C 147..155 CDD:409353 2/18 (11%)
Ig strand C' 157..159 CDD:409353 0/1 (0%)
Ig strand D 161..168 CDD:409353 1/7 (14%)
Ig strand E 173..181 CDD:409353 2/7 (29%)
Ig strand F 191..198 CDD:409353 1/6 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 41 1.000 Domainoid score I12165
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

Return to query results.
Submit another query.