DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr17 and ush2a

DIOPT Version :9

Sequence 1:NP_001287297.1 Gene:dpr17 / 41470 FlyBaseID:FBgn0051361 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_009291422.1 Gene:ush2a / 568982 ZFINID:ZDB-GENE-060503-794 Length:5243 Species:Danio rerio


Alignment Length:960 Identity:174/960 - (18%)
Similarity:273/960 - (28%) Gaps:399/960 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PQTSPNWRQADNERTKGAVSVIAARNWATGTATQDWSQKSS-----SSWSSTSRRTGI------- 54
            |...||          |.:|....  |..||..|:.|..:|     |.||..|.|...       
Zfish  2280 PPRKPN----------GVISSYGL--WMDGTLVQNSSLMASEVGDLSPWSLHSFRVQACTAQGCA 2332

  Fly    55 ------SRTRTRP----ATLT----TEMTVAGRAER--------------AGVGAPW-------- 83
                  |||...|    .||.    |..:|..:.|.              ||.|..:        
Zfish  2333 LGPLVESRTLEMPPVGHVTLVVFSETPHSVRAKWEAPAEPNGNLTYTVLFAGPGQNFSSLDTPDT 2397

  Fly    84 -CRRFFHTSPLASWLRISFVLLVLPALGFGIQVVTCSN-----------------------PELG 124
             .|....|.....|:.|..   :||...:.:.|..|::                       |.|.
Zfish  2398 EMRELLSTGKEGQWVSIGG---LLPYSNYSVMVKACNSLGCVESSPVSVSLPPGAPDGLLAPRLA 2459

  Fly   125 ASAPDPVDLTWGG---KNTEGQL--TTATRSTLPDSPMTTQNDLITTASNLATAKKPATAASEAV 184
            |:.|..:.::|..   .|..|.|  ....||:.........:|..||.|:..|..:|.|.....:
Zfish  2460 AATPTSLQVSWAAPARHNAPGALRYRLQMRSSASTQLHQLMDDETTTFSHTVTDLEPFTEYHFRL 2524

  Fly   185 VDTAETAETAPPTEATSSWSSTAVARG---------MSSADGAGEAIATSQSAQ-IGLTTQATVR 239
            :.:....||:.|      |.|...|:.         :|........|:.|..:| .|:.|...:.
Zfish  2525 LVSNSYGETSSP------WVSLFTAQDRPGAVDPPVLSDIQSRSAFISWSPPSQPNGIITHYNIY 2583

  Fly   240 QTEAQTAST-----------------------ATQAAAATSAATSAAIASAAAATE--------- 272
            |....|.|.                       |..||..|.:|.|..|.:..|..|         
Zfish  2584 QNRQLTTSVPENSTSHMLSHLTPFQQYTIQVEACTAAGCTLSAESHTINTPPAPPEDVPAPQLYS 2648

  Fly   273 -TAAEMLIS------------------------------TIYPASTETDLHNSI----------- 295
             |...:|:|                              ||.|..|.|.|.:|.           
Zfish  2649 DTPTSVLLSWAAPRLVNGELDGYTVERRVSGTQEISTVATIQPNQTLTYLDSSATLSPWSSYEYR 2713

  Fly   296 ---------------ERVEGQRGKMANAFHP-GV---PDSLT----------------------- 318
                           |:|..:..:.|....| ||   |:|:.                       
Zfish  2714 IVAHTRLGGSNSSVWEKVTTRPSRPAGMQPPDGVVLGPESVQVTWAAPLIPNGEIERYEIRMPEP 2778

  Fly   319 --------------------KGFS-----------------------------IPTFLPPFPVFA 334
                                .|:|                             ||..|.|..|.|
Zfish  2779 RIPHTNMSLLTHTVSGLMPYTGYSITILACSGGGGHVGGCTESLPTLVTTLPTIPQGLSPLSVVA 2843

  Fly   335 AADLPAYRAAADAAEAAKLAAEAAAQAAAAKTSSEAVTMSPEE--------QRRQMFNEQ----- 386
            .::  ::.|.:....:.........:....||.....:..||:        ...::|:|.     
Zfish  2844 ISE--SFLAVSWQLPSRPNGPNIRFELLRRKTQQPLASRPPEDFNLWYNVYAGTKLFHEDKGLSR 2906

  Fly   387 ---HSY-LAAHRDGGDGAGSAVRRNLTM---PV--LNITAQMGNHAYMPCQIHRLSDKPVSWV-- 440
               :.| :..|.|.|..:|. |...:|:   |:  .||:|...||..:          .|:|.  
Zfish  2907 YTWYEYKIVVHNDVGSASGE-VATGVTLAGQPLKPTNISAHALNHTAI----------LVNWTTP 2960

  Fly   441 RMRD-NHIISVDETTFIADERFQSIYQEDHDYTWSLQIKYVEPSDAGWY--ECQMATEPKLSAKV 502
            .::| ...:.|...|.::|:         |..|.:|     :|:....:  :.|.:|:.|||..|
Zfish  2961 TLQDLQGSVEVYILTVVSDQ---------HSQTLTL-----DPTVTSVFIPDLQPSTQYKLSLTV 3011

  Fly   503 ----HLQIVKPKTELIGDQSRFVKAGSKVALHCIVRGTLD-------PPKYIIWFRGQKKISDSD 556
                | .|..|:                  ::|.   |.|       ||:.:       .::.:.
Zfish  3012 SNGPH-NITSPE------------------VNCT---TTDGEPEGVFPPEVL-------TLNSTA 3047

  Fly   557 ERTGW------------YT-QLDRNIFGTVGDNQNTI--GSLI---IPLVRKEDSGNYTCQPSNS 603
            .|..|            |: .||..::|:.|:...::  |.|:   :..::.|....|.|..|||
Zfish  3048 VRVMWAPPLLPNGVVVQYSIYLDGRLYGSTGNESGSLEMGGLLPYTVHSIQVEVCTVYACVKSNS 3112

  Fly   604 VSVSVDLHVLSGEYSASAIMSTAART-----TKGGRSTCHSTLGLLGILG 648
            ..|:. :.....|.|...|...::|:     |..||..        ||||
Zfish  3113 TQVTT-VEDTPAEISTPHIQVLSSRSVKLEWTSPGRPN--------GILG 3153

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr17NP_001287297.1 IG_like 414..491 CDD:214653 15/81 (19%)
Ig 415..507 CDD:299845 21/100 (21%)
IG_like 521..612 CDD:214653 21/115 (18%)
IGc2 524..605 CDD:197706 20/105 (19%)
ush2aXP_009291422.1 Laminin_G_3 160..297 CDD:290121
Laminin_N 307..528 CDD:295486
EGF_Lam 529..577 CDD:238012
EGF_Lam 586..638 CDD:238012
Laminin_EGF 653..703 CDD:278482
Laminin_EGF 706..756 CDD:278482
EGF_Lam 759..797 CDD:214543
Laminin_EGF 808..857 CDD:278482
EGF_Lam 859..912 CDD:238012
EGF_Lam 913..963 CDD:238012
EGF_Lam 965..1014 CDD:238012
EGF_Lam 1015..1064 CDD:238012
FN3 1177..1253 CDD:238020
FN3 1264..1375 CDD:238020
FN3 1386..1469 CDD:214495
LamG 1537..1699 CDD:238058
LamG 1737..1890 CDD:238058
FN3 1981..2071 CDD:238020
FN3 2163..2253 CDD:238020
FN3 2258..2341 CDD:238020 17/72 (24%)
FN3 2352..2443 CDD:238020 15/93 (16%)
FN3 2447..2544 CDD:238020 22/102 (22%)
FN3 2547..2633 CDD:238020 16/85 (19%)
FN3 2635..2733 CDD:238020 14/97 (14%)
FN3 2743..2807 CDD:238020 7/63 (11%)
FN3 2830..2932 CDD:238020 19/104 (18%)
fn3 2939..3014 CDD:278470 21/98 (21%)
FN3 3032..>3099 CDD:238020 11/73 (15%)
FN3 3542..3611 CDD:238020
FN3 3615..3701 CDD:238020
fn3 3718..3784 CDD:278470
FN3 3801..3887 CDD:238020
FN3 3908..3971 CDD:238020
FN3 3996..4086 CDD:238020
FN3 4186..4284 CDD:238020
fn3 4288..4366 CDD:278470
FN3 4382..4465 CDD:238020
FN3 4470..4553 CDD:238020
FN3 4555..4653 CDD:238020
FN3 4679..4753 CDD:238020
fn3 4760..4830 CDD:278470
FN3 4864..4955 CDD:238020
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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