DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr17 and Strn-Mlck

DIOPT Version :9

Sequence 1:NP_001287297.1 Gene:dpr17 / 41470 FlyBaseID:FBgn0051361 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001261019.1 Gene:Strn-Mlck / 36753 FlyBaseID:FBgn0265045 Length:8255 Species:Drosophila melanogaster


Alignment Length:760 Identity:139/760 - (18%)
Similarity:226/760 - (29%) Gaps:283/760 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 SRTRTRPAT----LTTEMTVAGRAERAGVG-------APWCRRFFHTSPL---ASWLRISFVLLV 105
            ||:..|..|    ||...|.:|...:...|       ..|   |....|:   |.:.|       
  Fly  5293 SRSAKRKPTVDIQLTNRNTASGSDLKLTCGLSGHEMNVQW---FKDNCPIENGAKYRR------- 5347

  Fly   106 LPALGFGIQVVTCSNPELGASAPDPVDLTWG-----GKNTEGQLTTATRSTLPDSPMT------- 158
              .|..|:..:...:.|||.|         |     ..|..|::.|:...|:.::|.:       
  Fly  5348 --TLNDGLSCLEIKSAELGDS---------GIYRCIASNQNGEVETSCLVTIYEAPSSKFGTPPI 5401

  Fly   159 ----------TQNDLITTASNLATAKKPATAASEAVVDTAETAETAPPTEAT-------SSWSST 206
                      :|.:.:|....::.:.||..        ..:...|..|.|.|       |.....
  Fly  5402 FTRNIRDAYHSQGNQLTLECKVSGSPKPHI--------YWQRDNTLLPIEGTKYQYEEQSDGIKL 5458

  Fly   207 AVARGMSSAD-GAGEAIATSQSAQIGLT--TQAT--VRQTEAQ-----------TASTATQAAAA 255
            .......|.| |.....|.|::.|:.::  .||:  ||:..|.           ....::.|||.
  Fly  5459 LTINNFGSNDSGLYTCYAESENGQMKISKFVQASDYVRERIADKKPIDKVIQEIKRDESSSAAAN 5523

  Fly   256 TSAATSAAIASAAAATETAAEMLISTI----------YPASTETDLH--NSIERV-EGQRGKMAN 307
            .:||..|....|.........:...||          |......|:|  .:.||| :..|.|:.|
  Fly  5524 DTAAAKAKAREAKLRLNLETSLKTMTIGSGNKAQLICYVTGIIEDVHWLRNDERVTKDARHKIYN 5588

  Fly   308 AFHPGVPDSLTKGFSIPTFLPPFPVFAAADLPAYRAAAD-------AAEAAKLAAEAAAQAAAAK 365
                                    :..|..|..|.|..:       ..:.::...|:|.|.:...
  Fly  5589 ------------------------INGAISLEIYDARVEDSGHYRCVVKNSRQTVESAGQLSVLD 5629

  Fly   366 TS--------SEAVTMSPEEQRRQM--------------FNEQHSY------------------- 389
            .|        |..:..|.::||.::              ..:.||.                   
  Fly  5630 QSTGKLPESFSSGIIESYDDQRNEIVLSCQVIGRPSVSWMRDDHSICNNRYRTIEEPGGVRKLVI 5694

  Fly   390 -------------LAAHRDGGDGAGSAVRRNLTMPVLNITAQ----MGNHAYMPC---------- 427
                         .|.|.|..|.....::......::|::.:    :|:|...|.          
  Fly  5695 RNPISSDCGIFACYAEHEDRIDSTSITIKAADLKRLINVSQEEIPSIGDHESTPWSRSQSHLSSG 5759

  Fly   428 -------QIHRLSD---------KPVSWVRMRDNHI-----------ISVDETTFI--------- 456
                   ::||..|         ||:....:.|..:           :|.||.|.|         
  Fly  5760 SQVNGNGELHRAGDRVLRNVGKGKPLFHTLLHDRTVSEGANLRLVCSVSGDENTHIEWLKNHKPL 5824

  Fly   457 --ADERFQSIYQEDHDYTWSLQIKYVEPSDAGWYECQMATEPKLSAKVH--LQIVK-------PK 510
              :|.|:|::|.....   ||:|......|:|.|.| .||.....:..|  |::.|       |.
  Fly  5825 PRSDNRYQTVYLNGEA---SLEIFAAVADDSGNYTC-CATNDFGESLTHAQLRVYKNFKEAPLPS 5885

  Fly   511 TELIGDQSRFVKAGSKVALHCIVRGTLDPPKYIIWFRG------QKKISDSDERTGWYTQLDRNI 569
            |.....:..:....:::.|.|.|||  .|...|.|.:|      .:|...||:..|:        
  Fly  5886 TFTQPIRDTYSLNENELVLDCRVRG--QPRPEIQWIKGTEPIEASEKFKPSDQADGY-------- 5940

  Fly   570 FGTVGDNQNTIGSLIIPLVRKEDSGNYTC-----QPSNSVSVSVD 609
                       ..|:|....::|||.|.|     ...|.:|..||
  Fly  5941 -----------AKLVIVNPTEKDSGIYWCVARNEGAENKISHQVD 5974

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr17NP_001287297.1 IG_like 414..491 CDD:214653 25/128 (20%)
Ig 415..507 CDD:299845 29/145 (20%)
IG_like 521..612 CDD:214653 24/100 (24%)
IGc2 524..605 CDD:197706 21/91 (23%)
Strn-MlckNP_001261019.1 IG_like 51..127 CDD:214653
Ig <69..>112 CDD:299845
I-set 137..226 CDD:254352
I-set 235..314 CDD:254352
Ig_2 244..314 CDD:290606
I-set 438..513 CDD:254352
Ig 454..510 CDD:143165
I-set 537..626 CDD:254352
Ig 555..618 CDD:299845
I-set 636..713 CDD:254352
Ig 652..712 CDD:143165
SMC_N <2190..2854 CDD:280601
I-set 5300..5388 CDD:254352 21/108 (19%)
IGc2 5313..5378 CDD:197706 15/85 (18%)
IG 5412..5482 CDD:214652 14/77 (18%)
IGc2 5413..5481 CDD:197706 14/75 (19%)
I-set 5542..5627 CDD:254352 18/108 (17%)
Ig 5556..5621 CDD:143165 13/88 (15%)
Ig 5654..5721 CDD:143165 6/66 (9%)
I-set 5784..5874 CDD:254352 22/93 (24%)
IGc2 5797..5864 CDD:197706 18/70 (26%)
I-set 5887..5970 CDD:254352 21/103 (20%)
Ig 5902..5966 CDD:143165 20/84 (24%)
I-set 5997..6086 CDD:254352
Ig 6026..6083 CDD:143165
I-set 6097..6187 CDD:254352
Ig 6114..6187 CDD:299845
FN3 6216..6310 CDD:238020
I-set 6321..6412 CDD:254352
Ig 6328..6412 CDD:299845
I-set 6442..6531 CDD:254352
Ig 6459..6528 CDD:143165
I-set 6541..6632 CDD:254352
IGc2 6555..6622 CDD:197706
I-set 6662..6754 CDD:254352
Ig 6679..6751 CDD:143165
I-set 6779..6868 CDD:254352
IGc2 6793..6858 CDD:197706
Ig 6938..7022 CDD:299845
I-set 6939..7028 CDD:254352
IG 7075..7140 CDD:214652
Ig 7075..7140 CDD:143165
IG 7167..7239 CDD:214652
Ig 7173..7239 CDD:143165
Ig 7392..7475 CDD:299845
IG 7406..7475 CDD:214652
FN3 7489..7588 CDD:238020
S_TKc 7620..7876 CDD:214567
STKc_MLCK 7626..7876 CDD:271005
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.