DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr17 and itgb4

DIOPT Version :9

Sequence 1:NP_001287297.1 Gene:dpr17 / 41470 FlyBaseID:FBgn0051361 Length:664 Species:Drosophila melanogaster
Sequence 2:XP_005166847.1 Gene:itgb4 / 335269 ZFINID:ZDB-GENE-030131-7209 Length:1931 Species:Danio rerio


Alignment Length:356 Identity:72/356 - (20%)
Similarity:116/356 - (32%) Gaps:114/356 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 WSQKSSSSWSSTSRRTGISRTRT---RPATLTTEMTVAGRAERAGVGAPWCRRFF----HTSPLA 94
            :||.:|:|:|.:||    :||::   ..|.|..:..:.......||.|...|..|    ||:...
Zfish  1595 FSQTTSTSYSLSSR----ARTQSEDINDALLNLDSVLQESRFTPGVPATPSRLVFSALGHTALKV 1655

  Fly    95 SWLR-------ISFVLLVLPALGFGIQVVTCSNPELGASAPDPV---DLT--------------- 134
            ||..       :.:.:|.....|..::.:..:||     |.:.|   ||.               
Zfish  1656 SWQEPHCESDVLGYCVLYQLINGGDVKRIEVNNP-----AQNSVLVQDLLPNQSYIFKVKAQSRE 1715

  Fly   135 -WGGKNTEGQLTTATR-------STLPDSPMTTQNDLITTASN----LATAKKPAT--------- 178
             ||.:. ||.:|..:.       |.:|.||.|     ::|.|.    :.||.:|.|         
Zfish  1716 GWGPER-EGVITIESNVDPKSPLSPVPGSPFT-----LSTPSAPGPLIFTALRPDTLQLSWEKPR 1774

  Fly   179 -------------------------------AASEAVVDTAETAETAPPTEATSSWSSTAVARG- 211
                                           |.|..|.|..|........:|.::........| 
Zfish  1775 KPNGDILGYVVTCEQLHGGGDLRSFQVNGNAATSLTVSDLKENMPYKFKVQAQTTQGFGPEREGI 1839

  Fly   212 --MSSADGAGEAIATSQSAQ----IGLTTQATVRQTEAQTASTATQAAAATSAATSAAIASAAAA 270
              :.|.||...:..:|||..    ..|.|:.|  .|.....|....::......:|..|..:..:
Zfish  1840 ITIESQDGGSMSQYSSQSVTKREVFNLPTEIT--HTSHTMFSEPFVSSDGMMMMSSRQITESGGS 1902

  Fly   271 TETAAEMLISTIYPASTETDLHNSIERVEGQ 301
            .....||:...:..:||.|      :|:|.|
Zfish  1903 MTRQVEMVQRGVMSSSTVT------KRLERQ 1927

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr17NP_001287297.1 IG_like 414..491 CDD:214653
Ig 415..507 CDD:299845
IG_like 521..612 CDD:214653
IGc2 524..605 CDD:197706
itgb4XP_005166847.1 Integrin_beta 37..457 CDD:278776
EGF_2 <468..490 CDD:285248
EGF_2 545..573 CDD:285248
Integrin_B_tail 625..709 CDD:285239
Calx-beta 991..1064 CDD:295344
FN3 1242..1326 CDD:238020
FN3 1331..1420 CDD:238020
fn3 1640..1720 CDD:278470 16/84 (19%)
fn3 1751..1835 CDD:278470 11/83 (13%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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