DRSC/TRiP Functional Genomics Resources

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Protein Alignment dpr17 and Lsamp

DIOPT Version :10

Sequence 1:NP_731670.1 Gene:dpr17 / 41470 FlyBaseID:FBgn0051361 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_001401926.1 Gene:Lsamp / 29561 RGDID:71102 Length:378 Species:Rattus norvegicus


Alignment Length:348 Identity:81/348 - (23%)
Similarity:128/348 - (36%) Gaps:113/348 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   408 LTMPVL------------NITAQMGNHAYMPCQIHRLSDKPVSWVRMRDNHIISVDETTFIADER 460
            :|:|.|            |||.:.|:.|.:.|.:...:.| |:|  :..:.||......:..|.|
  Rat    39 ITIPGLPVRSVDFNRGTDNITVRQGDTAILRCVVEDKNSK-VAW--LNRSGIIFAGHDKWSLDPR 100

  Fly   461 FQSIYQEDHDYTWSLQIKYVEPSDAGWYECQMAT--EPKLSAKVHLQI-VKPKTELIGDQSRFVK 522
            .:  .::.|...:||:|:.|:..|.|.|.|.:.|  |||.| :|:|.: |.||...|..... |.
  Rat   101 VE--LEKRHALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTS-QVYLIVQVPPKISNISSDVT-VN 161

  Fly   523 AGSKVALHCIVRGTLDPPKYIIW---------FRGQK----------------------KISDSD 556
            .||.|.|.|:..|..:|  .|.|         |.|::                      ::|.:|
  Rat   162 EGSNVTLVCMANGRPEP--VITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSAD 224

  Fly   557 ER---------------------TG------------------WYTQLDRNIFGTVG-DNQNTIG 581
            .:                     ||                  ||.. |..|....| :.::|.|
  Rat   225 VKQVKVTVNYPPTITESKSNEATTGRQASLKCEASAVPAPDFEWYRD-DTRINSANGLEIKSTEG 288

  Fly   582 --SLIIPLVRKEDSGNYTCQPSNSVSVSVDLHVLSGEYSASAIMSTAARTTKGGRSTCH------ 638
              ||.:..|.:|..|||||..:|.:.|:....||     ...::.|.....:...:|.|      
  Rat   289 QSSLTVTNVTEEHYGNYTCVAANKLGVTNASLVL-----FKRVLPTVPHPIQEIGTTVHFKQKGP 348

  Fly   639 -STLGLLGILGL---LWAMQGAM 657
             |..|:.|.:.|   ||.:..::
  Rat   349 GSVRGINGSISLAVPLWLLAASL 371

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr17NP_731670.1 V-set 415..507 CDD:462230 28/94 (30%)
IG_like 521..612 CDD:214653 34/163 (21%)
Ig strand B 527..531 CDD:409353 2/3 (67%)
Ig strand C 542..546 CDD:409353 2/12 (17%)
Ig strand E 581..585 CDD:409353 3/5 (60%)
Ig strand F 595..600 CDD:409353 4/4 (100%)
LsampNP_001401926.1 Ig 55..145 CDD:472250 29/95 (31%)
Ig strand B 66..70 CDD:409382 1/3 (33%)
Ig strand C 78..82 CDD:409382 3/6 (50%)
Ig strand E 111..115 CDD:409382 2/3 (67%)
Ig strand F 125..130 CDD:409382 2/4 (50%)
Ig strand G 138..141 CDD:409382 1/3 (33%)
Ig_3 148..218 CDD:464046 15/72 (21%)
Ig_3 235..311 CDD:464046 18/76 (24%)

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