DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dpr17 and Lrit1

DIOPT Version :9

Sequence 1:NP_001287297.1 Gene:dpr17 / 41470 FlyBaseID:FBgn0051361 Length:664 Species:Drosophila melanogaster
Sequence 2:NP_666357.2 Gene:Lrit1 / 239037 MGIID:2385320 Length:624 Species:Mus musculus


Alignment Length:326 Identity:74/326 - (22%)
Similarity:107/326 - (32%) Gaps:122/326 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   372 TMSPEEQRRQMFNEQHSYLAAHRDGGDGAGSAVRRNLTMPVLNITAQM-------GNHAYMPCQI 429
            |:.||...   |.|..::|       |.:.:.:.| |...:|::.|.:       |:||.:   |
Mouse   145 TLPPEAAH---FLENLTFL-------DLSNNQLMR-LPEELLDVWAHLKTGPFLSGHHARL---I 195

  Fly   430 HRLSDKPVSWV---RMRD----------NHIISVDETTFIADERFQSIYQEDHDYTWSLQIKYVE 481
            ..|.|.|  ||   |:.|          :::|.::.....|..|               .:..|.
Mouse   196 LGLQDNP--WVCDCRLYDLVHLLDGWVSSNLIFIEARLRCASPR---------------SLAGVA 243

  Fly   482 PSDAGWYECQMATEPKLSAKVHLQIVKPKTELIGDQSRFVKAGSKVALHCIVRGTLDPPKYIIWF 546
            .|.....:||   .|:|...| ..|:.|             .||.|.|.|...|...|       
Mouse   244 FSQLELRKCQ---SPELRPGV-TSIISP-------------LGSTVLLRCGATGIPGP------- 284

  Fly   547 RGQKKISDSDERTGWYTQLDRNIFGTVGDNQNTIGS----LIIPLVRKEDSGNYTCQPSNSVSVS 607
                       ...|.....|.:.|||....::.||    |.:|:|...|||:|.||..|.:..|
Mouse   285 -----------EMSWRRANGRPLNGTVHQEVSSDGSSWTLLDLPVVSLFDSGDYICQAKNFLGAS 338

  Fly   608 VDLHVLSGEYSASAIMSTAARTTKGGRSTCHSTLGLLGILGLLWAMQG-------------AMHT 659
                    |...|.|::....:|           |..||.|:|||..|             |.|.
Mouse   339 --------ETLISLIVTEPQTST-----------GYSGIPGVLWARTGEGAEAAAYNNKLVARHV 384

  Fly   660 P 660
            |
Mouse   385 P 385

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dpr17NP_001287297.1 IG_like 414..491 CDD:214653 17/96 (18%)
Ig 415..507 CDD:299845 22/111 (20%)
IG_like 521..612 CDD:214653 25/94 (27%)
IGc2 524..605 CDD:197706 24/84 (29%)
Lrit1NP_666357.2 LRRNT 23..61 CDD:214470
LRR 1 60..81
LRR_8 63..143 CDD:290566
leucine-rich repeat 64..84 CDD:275378
LRR 2 84..105
leucine-rich repeat 85..132 CDD:275378
LRR 3 108..129
LRR_8 131..>176 CDD:290566 9/41 (22%)
LRR_4 131..172 CDD:289563 9/37 (24%)
LRR 4 132..153 3/10 (30%)
leucine-rich repeat 133..156 CDD:275378 4/13 (31%)
LRR 5 156..177 5/28 (18%)
leucine-rich repeat 157..180 CDD:275378 5/30 (17%)
leucine-rich repeat 181..205 CDD:275378 8/28 (29%)
TPKR_C2 201..>241 CDD:301599 8/56 (14%)
Ig 258..346 CDD:299845 30/127 (24%)
IG_like 268..346 CDD:214653 27/103 (26%)
FN3 432..502 CDD:214495
LRR 6 526..549
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.