DRSC/TRiP Functional Genomics Resources

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Protein Alignment Spt3 and spt3

DIOPT Version :9

Sequence 1:NP_650146.1 Gene:Spt3 / 41461 FlyBaseID:FBgn0037981 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_588193.1 Gene:spt3 / 2539570 PomBaseID:SPCC61.02 Length:307 Species:Schizosaccharomyces pombe


Alignment Length:305 Identity:69/305 - (22%)
Similarity:130/305 - (42%) Gaps:73/305 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 EIADIMRSFGDSDQPRTGSVKLVEQILQQQLRGIFNEASLVAMRRKQNPCPSQADFEFLMRNHPV 169
            ||..:|...|:...|...:.:|||::::.|:..:..:|:.:|:||.......: |..||:|:...
pombe    13 EIQQMMFILGEVQDPLPETTQLVEELIRGQVMEMLIQANELALRRGSRSITVE-DLFFLIRHDRA 76

  Fly   170 KIARMRKHLKDMRILKRFLSIRTGRPQD---------------------------FMDDLEQQEE 207
            |:.|::.:|....:.|: ...:...|.|                           |.:.:.:.||
pombe    77 KVNRLKTYLSWKEVRKK-AKEQDANPADTKDLFEEVDSKTRSMNAVAMPWEVKNMFTEPVPETEE 140

  Fly   208 DEELAIDVYELHDEDRM-------RRLFRADRISQILTGQQYLEFNEARKTSFYCRHGEKIKNKF 265
            .||         |.|.|       :||..||..::.:|.::|:.::|.|:.||..|.|:    :|
pombe   141 FEE---------DNDTMEMAYATRQRLKMADERTKKMTREEYVHWSECRQASFTYRKGK----RF 192

  Fly   266 RRF--LDLPADLRIPTPTMNILAYLAHETIAAIVDYSILTRLNSDNRATEPYSRVTSAGGSPAMM 328
            |.:  :.:..|.|.....::||.:|..|.:|.:.:.::..:...|.     ....:.:|||.|..
pombe   193 REWCGMSILTDTRPDNDIVDILGFLTFEIVATLTEEALAVKDRMDR-----IQNSSGSGGSHAAH 252

  Fly   329 HVCPE-------VTQGRG-------MEVVKPISVPE-IHEAMRRF 358
            |  |:       :|:||.       :|..:.:.:|: .|.|||.|
pombe   253 H--PKNCSLFDGLTEGRTPLQVSHVLEAFRRLQIPDKTHTAMRSF 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spt3NP_650146.1 TAF13 99..190 CDD:173962 21/84 (25%)
spt3NP_588193.1 TFIID-18kDa 8..99 CDD:190265 21/87 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3902
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 66 1.000 Inparanoid score I1965
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0006269
OrthoInspector 1 1.000 - - oto101204
orthoMCL 1 0.900 - - OOG6_105306
Panther 1 1.100 - - LDO PTHR11380
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2300
SonicParanoid 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
109.850

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