DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCAF12 and Dcaf12l2

DIOPT Version :9

Sequence 1:NP_001262495.1 Gene:DCAF12 / 41460 FlyBaseID:FBgn0037980 Length:459 Species:Drosophila melanogaster
Sequence 2:XP_006257572.1 Gene:Dcaf12l2 / 298159 RGDID:1560768 Length:470 Species:Rattus norvegicus


Alignment Length:417 Identity:170/417 - (40%)
Similarity:244/417 - (58%) Gaps:44/417 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 YLRSRESGL----------RDRRSVNVEYTSRYVLTHDMLRETQISLGYINKVFCSKWLSSRQVV 133
            ||:.|..|.          .|.||..|      :...::|||.|::||.:||||.|:||::||||
  Rat    60 YLKGRALGAYGHPGLVGFEGDLRSYGV------LRLPELLRERQLALGPLNKVFASQWLNARQVV 118

  Fly   134 FGTKCNKLLVYDVNMRRVDAIPTLSNSRANHPEVQG--GLHAIELSPSRSFLATGARNSSDIAVY 196
            .|||||.|.|.||...|:..||.|.:........|.  |:|||:|:||::.||||..|.:.:|||
  Rat   119 CGTKCNTLFVVDVQTGRITRIPLLRDRGPGQTRAQPTCGIHAIQLNPSKTLLATGGENPNSLAVY 183

  Fly   197 RLPTLDPVCVGE-GGHRDLIMGMCWLDDQFLVSGSKDSRMALWRINEDHMEFPDGG---EEACPT 257
            :||||||||:|: .||||.|..:.|:.|...||||:|..:||||::.|.......|   ....|.
  Rat   184 QLPTLDPVCLGDRQGHRDWIFAIAWMSDTVAVSGSRDGTVALWRVDPDMFNGSIQGWHNNSGIPR 248

  Fly   258 FATIHPLSVKEVRTA------QRIRSLCFNKEFKEIAALSLNGYIHIFNA-ETFKQTLSRKLPNC 315
            ::.|.|..::.:..|      :::|:|.|:...:|:.|:||:||.|::.| .:..:.||.:||.|
  Rat   249 YSHIRPRDMEAIPRATTNPGNRKVRALAFSGRNQELGAVSLDGYFHLWKARSSLSRLLSLRLPYC 313

  Fly   316 QDNVSIAYHSD-GLYAVGCRSYTILLDAR-TLQTIKKITSRYSGCGIRATSFEGNLLTVGTGLGM 378
            ::||.:.|..: .|||||.:|:...||.| ..|.||.:.||..|.|:|:.||..:::|||||.|.
  Rat   314 RENVCLTYCDELSLYAVGSQSHVSFLDPRQRQQNIKPLCSREGGTGVRSLSFYHHIITVGTGHGS 378

  Fly   379 LLFYDIRAGKYLESSVNAS---------RTVALKCSKGIVYPEDEM--DGFQQVKYVP-AIYTHC 431
            ||||||||.|:||...:|:         |.:.|.|.:|.: .:||:  :.|...:..| |:||||
  Rat   379 LLFYDIRAQKFLEERASANPDSFLGRTGRKLKLTCGRGWL-NQDELWVNYFGGTEEFPNALYTHC 442

  Fly   432 YDSTRMRLFAAGGPLPATLVGNYAGVW 458
            |:...|:||..|||||:.|.|||||:|
  Rat   443 YNWPEMKLFVGGGPLPSGLHGNYAGLW 469

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCAF12NP_001262495.1 WD40 116..388 CDD:295369 124/286 (43%)
WD40 <121..400 CDD:225201 126/302 (42%)
WD40 repeat 121..163 CDD:293791 22/41 (54%)
WD40 repeat 173..210 CDD:293791 22/37 (59%)
WD40 repeat 216..263 CDD:293791 15/49 (31%)
WD40 repeat 275..311 CDD:293791 13/36 (36%)
WD40 repeat 319..353 CDD:293791 14/35 (40%)
Dcaf12l2XP_006257572.1 WD40 repeat 106..144 CDD:293791 22/37 (59%)
WD40 <117..297 CDD:295369 72/179 (40%)
WD40 <158..424 CDD:225201 107/266 (40%)
WD40 repeat 159..198 CDD:293791 23/38 (61%)
WD40 repeat 203..228 CDD:293791 11/24 (46%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_28IW7
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 285 1.000 Inparanoid score I2768
OMA 1 1.010 - - QHG49760
OrthoDB 1 1.010 - - D423494at33208
OrthoFinder 1 1.000 - - FOG0003107
OrthoInspector 1 1.000 - - otm44708
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19860
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X2078
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1211.940

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