DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCC185 and AT3G15970

DIOPT Version :10

Sequence 1:NP_001097755.1 Gene:GCC185 / 41459 FlyBaseID:FBgn0037979 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_566532.1 Gene:AT3G15970 / 820841 AraportID:AT3G15970 Length:465 Species:Arabidopsis thaliana


Alignment Length:390 Identity:75/390 - (19%)
Similarity:135/390 - (34%) Gaps:98/390 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   485 EQANADAQSDVLSTSTISRAEELSRLRELDEGYEEKYHKLRA----------IAAKLKKKL---- 535
            ::..||.:||.              .:|.|...:||...:.|          |:||.|..:    
plant   103 QETLADGRSDA--------------TKETDGDSKEKSDAIDAVGKQETQGDEISAKTKDIIDGGE 153

  Fly   536 QEQTQQLNEMEQSGALKEELEAIKLAQ-AQLQQDLNAARAENQKLKSKE----KVKHSSVLNLEI 595
            :|.::.:|.:|..||:.:..:.||... .::.......:.:|....:.|    .||.:.....|.
plant   154 KEMSEAVNSVEGGGAVNKNEDEIKTTMVTEVAAGEETVKDDNNNSNTVEGSDCVVKDTGGNQTEK 218

  Fly   596 EAAEKSLSEVSAKLTAKSSELEAVKESLASKENTIVQLRKEIAILEEAKNGEAAHSLELKEQIDR 660
            |..|...:|.:.| ...|..|.:..:..:|| |....|         |..|.:|.|...      
plant   219 EGKEGDGNEDTEK-NGDSGALSSFHQHSSSK-NAFTGL---------ASTGFSASSFSF------ 266

  Fly   661 MQVQVKDAVHSKQQALTQNKDLEHGVEQAKLEAEQLRLQLSESAQQYESKLNTATQQLLSQTQEL 725
                         ..:.|......|.||:.....|        |....|.|..|:......|:..
plant   267 -------------GLVPQEGSTGSGSEQSSFSFGQ--------ANNGNSSLFGASVATSITTKST 310

  Fly   726 EMHLA----EQKRLETALRNAERAL--EDLRVEYTE--YKLKAQSVLRKNQNKGSNREQELEEEL 782
            |...|    :...:||...|.:.|.  :.:..||.|  :|.:.:..|:.|.:...||:..|    
plant   311 ETTTAFPSKQDVSVETGEENEKAAFTADSVMFEYLEGGWKERGKGELKVNISTTENRKARL---- 371

  Fly   783 VALRESERNLRASNDGR---AARLAQLD---------SQIEELRQDNTDLQKRSKELVSLVDELR 835
              :..|:.|.|.:.:..   ..:||::|         :.:.:.:...:.|..:.|: .::|:|.|
plant   372 --VMRSKGNYRLTLNASLYPEMKLAKMDKKGITFACVNSVSDAKDGLSTLALKFKD-PTVVEEFR 433

  Fly   836  835
            plant   434  433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC185NP_001097755.1 PRK03918 <33..559 CDD:235175 18/87 (21%)
Smc <357..>920 CDD:440809 75/390 (19%)
Grip 1057..1103 CDD:197860
AT3G15970NP_566532.1 NUP50 13..77 CDD:462629
2A1904 <93..>237 CDD:273344 30/148 (20%)
RanBD_NUP50_plant 326..443 CDD:269990 23/115 (20%)
Blue background indicates that the domain is not in the aligned region.

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