DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCC185 and golga3

DIOPT Version :10

Sequence 1:NP_001097755.1 Gene:GCC185 / 41459 FlyBaseID:FBgn0037979 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_001122017.2 Gene:golga3 / 570879 ZFINID:ZDB-GENE-060526-252 Length:1493 Species:Danio rerio


Alignment Length:1187 Identity:248/1187 - (20%)
Similarity:489/1187 - (41%) Gaps:273/1187 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 AAEKQSSLPAMQEMVQDFTDKNLILTEEV-----NNLKRKTKEDA---------------DRLTQ 103
            |||.....|::||::|..|::..:  ||:     .:::.:::.|:               |.:.|
Zfish   356 AAEAMGHFPSLQEVLQAATEERHM--EELEQDREGSVEPRSRRDSFSSSVSYGSSVMGTHDEMLQ 418

  Fly   104 FEIENESLKRQLGRLSDEN----------DALLANVDRMEKAMQQVNALGNEQ-----------R 147
            ...|...|:.||..||.|.          .|.||.|:...||..:....|.|:           |
Zfish   419 VLKEKMRLEGQLESLSSEASQALKEKTELQAQLATVNAQLKAQVEQTQAGQERQSTLKTEVTTLR 483

  Fly   148 KNLELLEVDIAKIK-EAEAENASLRQQVATMEEESSVLQQKYQNIKELNSEQRKKFNSLKDRFID 211
            .|...||..:..:: ..|.:||||    |::..:..|.:::||.:.....|.::..|:..:...:
Zfish   484 SNCSALEKAMVDLQTNLEGKNASL----ASLGNDLEVAEEQYQRLMVKVEEMQQSLNAKDNTVSE 544

  Fly   212 VHRKLKNLKECKCVLLETQHEYAASVSKW---QVEIIKASQL-----------------LCAKMA 256
            :.:::..|   :..|...|.|..|..|:.   |.|:....||                 |..:||
Zfish   545 LRQQMGGL---QTQLQRVQSERNALQSRLKTSQAEVDSLQQLRLWYQQQLNLAQEARVRLQGEMA 606

  Fly   257 SLQA---------EN---EKLKLNNGKSDNNPQTIDTGIDRKRLLQRVQEMDRLAKIVKQKQKNQ 309
            ::||         ||   |.:.|::..::.|.::|             :|.:|:|   .|.|..:
Zfish   607 NMQAGQMTQFGVLENLKIENVTLSHKLTETNHRSI-------------KEKERIA---VQLQSIE 655

  Fly   310 RSNLNVEYLLKKITALEELAVIIKQ--QHRIDKEQLISVTKEQENTKNHARNLNVSLFQTKLDQM 372
            ...|..|..:.:|   :|...::::  ||:::         |.|..:.|.  |.::...|.|::.
Zfish   656 ADMLTQEAAIHQI---QEAKTMVEEDLQHKLE---------EFEEEREHL--LKLANTATTLERE 706

  Fly   373 QNLVKVIAKERDNQQRKLQELEAICIELRQHNEDLLTRYHLKEQEHGELLTEMRELNEALKGRGD 437
            ...||::..::|:|...||                        :||.||:.::....|.|:.:..
Zfish   707 LEQVKLVLFQKDSQLESLQ------------------------REHLELMKQLTTTQETLQTKEQ 747

  Fly   438 AISRLQEQHEAEVKRQRDLEAQLSNSQQAAQEKLQKIKQLQSRVEELEQANADAQSDVLSTSTIS 502
            |:::|:       .|.::|:.||...|..|..|.:.::.||:....||.|...|::|        
Zfish   748 ALNQLE-------ARYQELQVQLEELQTDASAKEETLQYLQNEKIVLEVALQAARAD-------- 797

  Fly   503 RAEELSRLRELDEGYEEKYHKLRAIAA----KLKKKLQEQTQQLNEME-QSGALKEELEAIKLAQ 562
                   ..||||| .||..:...:|:    :|::::|.:..|:..:: ::|.||::.:.:|   
Zfish   798 -------KSELDEG-AEKLGEEVLVASDTLDQLRQEVQVKATQIEALQHENGTLKKQAQKLK--- 851

  Fly   563 AQLQQDLNAARAENQKLKSKEKVKHSSVLNLEIEAAEKSLSEVSAKLTAKSSELEAVKESLASKE 627
            .|..|......|..:...|||:      |..|::|::|.|......|..:..:.|..|:|...::
Zfish   852 EQFMQQKVMVEAYRRDASSKEQ------LISELKASKKRLVAEVKDLKQELLKTEGEKKSAVQEQ 910

  Fly   628 NTIVQLRKEIAILEEAKNGEAAHSLELKEQIDRMQVQVKDAVHSKQQ--ALT-QNKDLEHGVEQA 689
               .:|:||:..:::..||..||...::.:.|::..|::.....:.|  |:| :|::|...|||.
Zfish   911 ---ARLQKEVERVQQQMNGLEAHLQSVQTERDQLDSQLQSLQFDQNQLAAVTEENENLRKRVEQM 972

  Fly   690 KLEAEQLRLQLSESAQQYESKLNTATQQLLSQTQELE-MHLAEQ-------KRLETALRNAERAL 746
            :.||   |..:||.    :.|:......|.|..:|:: .|.|.:       :||:.||...|.|.
Zfish   973 QNEA---RTAISEQ----KVKMKRLGTDLTSAQKEMKAKHKAYENAVGILSRRLQEALAAKETAE 1030

  Fly   747 EDLRVEYTEYKLKAQSVLRKNQNKGSNREQELEEELVALRESERNLRASNDGRAARLAQLDSQIE 811
            .:|.      |||||.....|..:...:.:.|:.||.|:.:|:              |.|:.:::
Zfish  1031 AELD------KLKAQVADGGNSQELQAKVKSLQGELQAVSQSK--------------AMLEKELQ 1075

  Fly   812 E-LRQDNTDLQKRSKELVSLVDELRQQ-------------NDLLSLENQRQ------LQFQHDLM 856
            | :...:|:|::..::::.|.|||::.             |..|:||.:.:      |...|..:
Zfish  1076 EVITLTSTELEEYQEKVLELEDELQESRNFKKRIRRLEDANKKLALELEHEKGKLSGLGKSHSAL 1140

  Fly   857 QQHRQQVDELDAGHQLQLTQVQEQLEEAQKMQANVSQHTTASAASVDTSPEQAKIDYLLMDHETG 921
            ::|...::...|..:..|.|:..|::...|.:....|.......::.|:.|:.||..        
Zfish  1141 REHANILEAALAKREADLVQLNLQVQAVLKRKEEEDQQMRQLVQTLQTALEKEKIKV-------- 1197

  Fly   922 LDGHAGDVSLAQLAAQRKISTASRRSHDFMPLDELLNTSMN-QITSDTVTTISNFGRSVSQQEDE 985
                   ..|.:..|:.|:..|..|.|....:.||.....: |...:.|..:.....:::.|:::
Zfish  1198 -------KDLTEQVAEAKLEAAHNRRHYRAAVLELSEIKKDLQAKEELVKALEKEATTLAAQDEK 1255

  Fly   986 EAEMAA--RGDFSVQSAQLQATKERLS-------IQESRVKHLTALLAENEQDLAKLTQMNDMLK 1041
            .:|..:  |.:.:....|||..:::|.       :....|:.|...:.:.::::....|..:|::
Zfish  1256 HSEEVSRFREELADAHTQLQILQKQLDDELNKQPVTNQEVEDLKWEVEQKQREMEAQKQQLEMVE 1320

  Fly  1042 EELRRQERSEER-------EQHMHNSEYLKNVFLKFLTLNNVDERQRLVPVLNTILRLSRN-EME 1098
            :..:|:.:|::.       |..|...|.......||:....|.|   |...:.|:|:.:.. :.:
Zfish  1321 QCHQREMQSQQDMLQTIKVELEMVQEELNGTRKDKFMLQAKVGE---LRNSMKTVLQQNNQLKQD 1382

  Fly  1099 MLNCVAKGQKVSADGSS 1115
            :.|...:.|::...|.|
Zfish  1383 LKNSRLRKQRMDLKGES 1399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC185NP_001097755.1 PRK03918 <33..559 CDD:235175 123/580 (21%)
Smc <357..>920 CDD:440809 133/598 (22%)
Grip 1057..1103 CDD:197860 10/46 (22%)
golga3NP_001122017.2 None

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