DRSC/TRiP Functional Genomics Resources

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Protein Alignment GCC185 and mud

DIOPT Version :10

Sequence 1:NP_001097755.1 Gene:GCC185 / 41459 FlyBaseID:FBgn0037979 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_727769.3 Gene:mud / 44839 FlyBaseID:FBgn0002873 Length:2567 Species:Drosophila melanogaster


Alignment Length:231 Identity:48/231 - (20%)
Similarity:76/231 - (32%) Gaps:65/231 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 PVSKKP-TADDNMDFLDFVTAKPEKTESVEEHIEAPMIVEPVHAENETAAAAGGKKKNKKNKNKK 540
            ||.|.| :.:.|..|...:.: |..|..: .:.....:|:|...:|:.|||.|            
  Fly   314 PVLKYPYSTNSNSSFPQLIPS-PMATFHI-HNASVTFVVKPGVPQNDFAAAPG------------ 364

  Fly   541 NSESES-------TPAAEPVKEVT-----------------------PEIVEEV--------FEK 567
              :|.|       .|||||..:.|                       .|:..:|        .:|
  Fly   365 --QSRSVYSPQIWNPAAEPKFDYTFSDPVKVYNFSINLQTVKLENDGDELDVQVGSVDGLTTLDK 427

  Fly   568 KTITPSTAAAAAPAPGSKKNKKNKKNSESESAPAAEPVKEVTPEIVEEVFEKKTVTPSTEAAAAP 632
            |....:.:.|.....|...|.|...:..||.......:..:.|:...: ....||.||...:.||
  Fly   428 KYNKDTKSDAYLSGIGRYLNLKYTGSKTSEVILNFVMIDRLNPDGTTQ-SPGTTVVPSGSFSTAP 491

  Fly   633 ASASKKNKKNKKGSGISESHDTAPAPTVEIPQTTEG 668
            ...|...:..:.||         .|.:|.:..||:|
  Fly   492 IVTSVSTRATRTGS---------TATSVHVETTTKG 518

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC185NP_001097755.1 PRK03918 <33..559 CDD:235175 23/112 (21%)
Smc <357..>920 CDD:440809 48/231 (21%)
Grip 1057..1103 CDD:197860
mudNP_727769.3 SMC_prok_B <224..>467 CDD:274008 33/168 (20%)
SMC_prok_B <576..1365 CDD:274008
SMC_prok_B 994..1863 CDD:274008
Blue background indicates that the domain is not in the aligned region.

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