DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCC185 and Nup358

DIOPT Version :9

Sequence 1:NP_001097755.1 Gene:GCC185 / 41459 FlyBaseID:FBgn0037979 Length:1135 Species:Drosophila melanogaster
Sequence 2:NP_001247302.1 Gene:Nup358 / 43041 FlyBaseID:FBgn0039302 Length:2718 Species:Drosophila melanogaster


Alignment Length:1090 Identity:196/1090 - (17%)
Similarity:354/1090 - (32%) Gaps:374/1090 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   364 LFQTKLDQMQNLVKVIAKERDNQQRKLQELEAICIELRQHNEDLLTRYHLKEQEHGELLTEMREL 428
            :|.|:.:...::.|::.|.:..::|.::.|             .:.|.::|.||:.:.:   ..|
  Fly     1 MFTTRKEVDAHVHKMLGKLQPGRERDIKGL-------------AVARLYMKVQEYPKAI---EYL 49

  Fly   429 NEALKGRGDAI---------SRLQ--EQHEAEVKRQRDLEAQLSNSQQAAQEKLQKIKQLQSRVE 482
            |..|:.|.||:         |||.  :..||....||.::.....|:.........:|:..:.:.
  Fly    50 NGYLRVRDDAVGHNMIATCYSRLNPPDVTEALQHYQRSIQIDPRQSEVVIDACELLVKENNASIT 114

  Fly   483 E-----LEQAN-------------------ADAQSDVLSTS-------TI---------SRAEEL 507
            |     |:|||                   ||:..:...||       |:         :|.:::
  Fly   115 ECARYWLDQANSLDLSGNKQVFNLRMRVNLADSNGERDDTSGGDGEQNTLEILMYKELQARPQDV 179

  Fly   508 SRLRELDEGYEEKYHKLRAIAAKLKKKLQEQ--TQQLNE-MEQSGALKEELEAIK---------- 559
            :...:|...|.||....:|....||.:|:.:  |.|.|| .||...:..::|..|          
  Fly   180 NIRIQLLRSYVEKMKIDQAFNYALKTELESKNCTSQSNEWYEQIWMVLFKIEMAKDVKKNWRFWH 244

  Fly   560 --------LAQAQLQQDLNAARAENQKLKSKEKV-KHSSVLNLEIEAAEKSLSEV-----SAKLT 610
                    |.|..|:.. ..|.:..|..:..:.: |.|:.:....:|.::.|.:.     :.:|.
  Fly   245 FALHTLDRLVQLSLEGS-GLADSSKQLFRLDQYLFKFSTSIERSGDAPQRDLHQACIDHFTGQLL 308

  Fly   611 AKSSELEAVKESLASKENTIVQLRKEIAIL----------EEAKNGEAAH-SLELKEQI------ 658
            ..:..|...:|.||:|...:..||..:.:|          :.:.|....| ..|.|:.|      
  Fly   309 LHAVTLIFKREVLANKNKWMSTLRSALPLLLLGYQVRPIDDSSTNQWIKHCDAEQKQLIQMWRPQ 373

  Fly   659 ----------------DRMQVQVKDAVHSKQQA-LTQNKDLEHGV-------EQAKLEAEQLRLQ 699
                            ||.|:::|   :.::.| ..:||:..:.:       |:....|.|..|.
  Fly   374 GAFRCAQLGRTLLGCLDRSQMEIK---NDRENAEFDENKNSGNSMPGLFADSEELLASAHQQCLD 435

  Fly   700 LSESAQQYESKLNTATQQLLSQTQELEMHLAEQKRLE---------------------------- 736
            .|..:|.|:.....|..:|    ::...||....||:                            
  Fly   436 KSWRSQIYQQLFTHAEHKL----KDTSSHLVRNLRLQLPLFEWPNLAHIENYELQALVLPPHSLA 496

  Fly   737 -----------TALRNAERAL------EDLR--VEY---------------------TEYKLKAQ 761
                       ..|.:|.|.:      .|::  :.|                     |..||:.|
  Fly   497 QHVYLALGTDPNKLGDAPRVVFYEGFQRDVKQNLNYCGQDSISQVDVDLYLYATTIQTRRKLQIQ 561

  Fly   762 SVLRKNQNKGSNR--------------------EQELEEELVALRESERNLRASNDGRAARLAQL 806
            ..:..:.|.|:..                    ||....:||....|.:.:...|  ||.:.|||
  Fly   562 REVYDSSNLGNRNAAARPHMMPFANLVGQLGAPEQSNWWDLVVRLNSNQLITEGN--RAEQRAQL 624

  Fly   807 DSQIEELRQDNTD-------------LQKRS--KELVSLVDELRQQ------------------- 837
            ...:|.:|..|..             |..||  ..|.:.:|.|.:|                   
  Fly   625 QHGLEAVRGVNGPKADAIIIFQLGKILNSRSDRSSLEARIDTLYRQGFSILRHQHNQQMESYVRV 689

  Fly   838 ------------NDLLSLENQRQLQFQHDLMQ--QHRQQVDEL-------------DAGHQLQLT 875
                        .||.||..:....|...:.:  |:.|.:||:             :|.|.|:.:
  Fly   690 FKYGSAGSTAAWQDLQSLAEEAVTYFSEKMFRIGQYEQFLDEVRGLHLPMAYFLQSEACHHLEES 754

  Fly   876 -------------QVQEQLEEAQKMQANVSQHTTASA----------ASVDT---SPEQAKIDYL 914
                         :.:|.|::.||:..|..:|...:|          ..:|.   ||:.......
  Fly   755 SKLPRTSRDRYSERRRECLQKTQKLIKNDDKHPLIAAMHRHQQDRNSRGIDNSFGSPDVHNNSSA 819

  Fly   915 LMDHETGLDGHAGDVSLAQLAAQRKISTASRRSHDFMPLDELLNTSMNQITSDTVTTISNFGRSV 979
            ..|.|.....||.      .:|.|     |||..:..|:..::....:|.....|..||   :|:
  Fly   820 YEDAEDDFYSHAA------FSANR-----SRRQLEVTPVTPIVMAQPSQEMEQAVKQIS---KSL 870

  Fly   980 SQQEDEEA--EMAARGDFSVQSAQLQATKE-----RLSIQESRVKHLTALLAENEQDLAKLTQMN 1037
            ...:|:.:  ..|.|.|..|.:.:....::     ::|.:::..:.:....|....||..:   .
  Fly   871 CVLKDDVSVGMEAMRQDIKVLTEKFTGLEDLLKKIKISSRDTPTRDVDPAAALGLDDLFII---E 932

  Fly  1038 DMLKEELRRQERSEEREQHMHN---------SEYLKNVFLKFLTLNNVDERQRLVPVLNTILRLS 1093
            |.|.|   .|::.:.::|..||         :.|....:.......:..||....|..:.:.   
  Fly   933 DALAE---HQQQQQHQQQQSHNQGAIHPVVPNPYTSGFYNGMPNTPSAQERFLQGPYGSPMF--- 991

  Fly  1094 RNEMEMLNCVAKGQKVSADGSSRSWTGFLTAWSGGGS--------PNNNN 1135
             |:.:|.|..|      |...:::...||......||        |.|.|
  Fly   992 -NQNQMYNYYA------AQAQAQAQAQFLRTPPAPGSIPPPNMFGPRNPN 1034

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC185NP_001097755.1 SMC_prok_B 35..813 CDD:274008 118/655 (18%)
TMPIT 458..>548 CDD:285135 26/132 (20%)
GRIP 1058..1100 CDD:279767 7/50 (14%)
Nup358NP_001247302.1 TPR <14..128 CDD:223533 28/129 (22%)
TPR repeat 58..90 CDD:276809 9/31 (29%)
Atrophin-1 <1030..1308 CDD:331285 3/5 (60%)
RanBD1_RanBP2_insect-like 1324..1442 CDD:269992
RanBD2_RanBP2_insect-like 1620..1737 CDD:269993
RanBP2-type Zn finger 1774..1793 CDD:275376
Nucleoporin_FG2 1806..>1986 CDD:330420
RanBP2-type Zn finger 1833..1861 CDD:275375
zf-RanBP 1891..1917 CDD:279035
RanBP2-type Zn finger 1894..1913 CDD:275376
RanBD3_RanBP2_insect-like 2034..2148 CDD:269994
RanBD4_RanBP2_insect-like 2571..2694 CDD:269995
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5171
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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