DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GCC185 and ranbp2

DIOPT Version :10

Sequence 1:NP_001097755.1 Gene:GCC185 / 41459 FlyBaseID:FBgn0037979 Length:1135 Species:Drosophila melanogaster
Sequence 2:XP_073768430.1 Gene:ranbp2 / 100317326 ZFINID:ZDB-GENE-081104-93 Length:2746 Species:Danio rerio


Alignment Length:977 Identity:194/977 - (19%)
Similarity:339/977 - (34%) Gaps:281/977 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 GLLNIAKKAKQAKDELTEENHRLKDALKRAAE--KQSSLPAMQEMVQDFT-----DKNLILTEEV 87
            |:.....||...:.:.:..:    |.||..||  |:....|:|....|..     |.|.:::.:.
Zfish  1423 GITEPQTKASDTQPQTSSAS----DLLKNIAELHKEKEKEAIQSSSDDSADTSAHDDNPLISGKA 1483

  Fly    88 N-----NLKRKTKEDADRLTQFEIENESLK------RQLGRLSDENDALLANVDRMEKAMQQVNA 141
            :     :|.:.:||.    .||..::.|.:      :||..:..:.|......|.|.:       
Zfish  1484 DTFSFADLAKSSKEG----FQFGQQDPSFRGFAGAGQQLFTVLPKPDTSADQEDEMYR------- 1537

  Fly   142 LGNEQRKNLELL-------EVDIAKIKEAEAENASLRQQVATMEEESSVLQQK-YQNIKELNSEQ 198
              .|:..:::..       :||:...:|.|....|.|.::...:.|:|..::: ..|:|.|.:.|
Zfish  1538 --TEENDDIQFEPVVQMPDKVDLVTGEEDEKILYSQRVKLFRFDPETSQWKERGVGNLKLLKNNQ 1600

  Fly   199 RKKFNSLKDRFIDVHRKLKNLKECKCVLLETQ---HEYAASVSKWQVEIIKAS------QLLCAK 254
            ..|...|.       |:.:.||.|....:.|.   ...|.|...|.......|      :.|.||
Zfish  1601 NGKLRVLM-------RREQVLKVCANHWITTTMNLKPLAGSDRAWMWLASDFSDGDARLEQLAAK 1658

  Fly   255 MASLQ-AENEKLKLNNGKS---DNNPQT----IDTGIDRKRLLQRVQEMDRLAKIVKQ----KQK 307
            ..:.: ||..|.:....:.   |...||    ::|| ....|:|:.:||....|.:|.    :.|
Zfish  1659 FKTPELAEEFKQRFEECQRLLLDIPLQTPHKLVNTG-RTAHLIQKAEEMKSGLKDLKSFLTPQSK 1722

  Fly   308 NQRSNLNVEYLLKKITALEELAVIIKQQHRIDKEQLISVTKEQEN-----------TKNHARNLN 361
            .:.|:         :||....:||:|    :|.| ..|...|.:|           ||..|.:.:
Zfish  1723 EEESS---------VTADSTSSVIVK----LDSE-TTSTALEWDNYDLREGALKSYTKPSASDAS 1773

  Fly   362 V-------SLFQ----------------------TKLDQMQNLVKVIAKERDNQQRKLQELE--- 394
            |       |||:                      .||:|.|..|..     |::|...||.|   
Zfish  1774 VQPDTVAKSLFRFGESTTGFSFSFQPILSPSKSPCKLNQSQASVGT-----DDEQDTSQEEERDG 1833

  Fly   395 -----------AICIELRQHNEDLLTRYHLKEQEHGELLTEMRELNEALKGRGDAISRLQEQHEA 448
                       .:.:...:.:|.:|..:..|...:.:.|::.:|     :|.|| :..||.....
Zfish  1834 QYFEPVVPMPDLVEVSTGEEDEQVLFSHRAKLYRYDKTLSQWKE-----RGIGD-LKILQHYETK 1892

  Fly   449 EVK--RQRDLEAQL-SNSQQAAQEKLQKIK--------------QLQSRVEEL------------ 484
            .|:  .:||...:| :|....:..||:.:|              :.|.:||:|            
Zfish  1893 RVRLVMRRDQVLKLCANHWIDSSMKLEPMKGAEKAWIWSAFDFAEGQGKVEQLAVRFKLQDTASI 1957

  Fly   485 -----EQANADAQSDVLSTSTISRAEELSRLRELDEGYEEKYHKLRAIAAKLKKKLQEQTQQLNE 544
                 |:|......|.|.....:|  |.|.::|...|.       .|:|.     |:|.|::.:.
Zfish  1958 FRDVFEEAKTALDRDTLLNPRSAR--EASFIQESICGQ-------AAVAV-----LEETTKEPSG 2008

  Fly   545 MEQSGALKEELEAIKLAQAQLQQDLNAARAENQKL----KSKEKV----KHSSVLNLEIEAAEKS 601
            :.:..:.|.|    :...|:....::.......|.    .|.:|:    |.:|.:: .:..|::.
Zfish  2009 LPEHSSPKPE----RTPPAEFSTPVSKTVVSPPKFVFGSDSVQKIFGSPKENSAVS-PVRTADED 2068

  Fly   602 LSEVSAKLTAKSSELEAVKESLASKENTIVQLRKEIAI-----LEEAK-NGEAAHSLELKEQIDR 660
            ..|...|.:|.:|.......||.:| :...:|.|:..:     ..:|: ..:|..||:       
Zfish  2069 SGESRLKTSAVTSSQAGTPFSLPTK-SLDFRLFKDNPMAFWTCTSDAQFEAQACPSLK------- 2125

  Fly   661 MQVQVKDAVHSKQQALTQNKDLE------HGVEQAKLEAEQL--------------RLQLSESAQ 705
             |..|:|..:...    .:.|||      ...|||.|.|..|              ..:..|..:
Zfish  2126 -QKSVQDLYNDDD----DDDDLEVIFERQPTREQADLAASLLLPHTFFCYKNRPGYTSEEEEDDE 2185

  Fly   706 QYESKLNTATQQLLSQTQELEMHLAEQKRLETALRNAERALEDLRVEYTEYKLKAQSVLRKNQNK 770
            .:||.:.:...||.....|..  |..:||.........|.|                :|......
Zfish  2186 DFESAVRSLQGQLYEDDHECV--LVWEKRASADEEQRARRL----------------LLPPTFLC 2232

  Fly   771 GSNREQELEEELV----------ALRESERNLRASNDGRAARLAQLDSQIEELRQDNTDLQ-KRS 824
            |.:.:.:||.|..          .|.:::..|..|:|...|..:.::.|..: |....||. |||
Zfish  2233 GVSSDSDLEPERAEDSSTHTQADTLTQTQVRLDPSHDASVASSSTMELQKTD-RSSPIDLSTKRS 2296

  Fly   825 KE 826
            .|
Zfish  2297 SE 2298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GCC185NP_001097755.1 PRK03918 <33..559 CDD:235175 132/660 (20%)
Smc <357..>920 CDD:440809 114/592 (19%)
Grip 1057..1103 CDD:197860
ranbp2XP_073768430.1 None
Blue background indicates that the domain is not in the aligned region.

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