DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT1G27420

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_174062.1 Gene:AT1G27420 / 839632 AraportID:AT1G27420 Length:346 Species:Arabidopsis thaliana


Alignment Length:391 Identity:97/391 - (24%)
Similarity:140/391 - (35%) Gaps:146/391 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   202 EVIFEACMKWVKYAEDKRSELFPQVLAAVR-LPLLSPQFLADRVAREELIRSSHQCRDLLDEAKD 265
            ::..:.|.:|       ||.|..|..|||| |.....:||.       ::..|...||:..|..|
plant    32 QITSQVCRRW-------RSFLRSQHFAAVRKLTGTVEEFLC-------VLMESECGRDVYWEVFD 82

  Fly   266 FHLMPERRGLLQSFRTRQRSGEFFTGQIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRS 330
                              .||... |||..|.|               ||.:.:           
plant    83 ------------------ASGNKL-GQIPPVPG---------------PLKRGF----------- 102

  Fly   331 RVGVAVLN-GKLYAFGGF--------NGTERLSTVEVY--DPRKNKWSQGCAMLCKRSAVGVAAL 384
              |||||: ||:..|||:        |.|...::.:||  ||..|.|.:...|...|.....|.:
plant   103 --GVAVLDGGKIVFFGGYTEVEGSGINSTTVSASADVYEFDPANNSWRKLAGMNIPRYNFAFAEV 165

  Fly   385 DDCIYVCGGYDGVT-SLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFD 448
            :..:||..||...| ||:..|||.||:|.|                               |:..
plant   166 NGLLYVIRGYSTDTYSLSNAEVYNPKTNQW-------------------------------SLMH 199

  Fly   449 SVERYDQAEDVWVKMSPMLNRRCRLGVA-TLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTP 512
            ...|     .||            .|.| ..:.|:|..|.  |:.|   ::.|||:|.||:   .
plant   200 CPNR-----PVW------------RGFAFAFSSKLYAVGN--GSRF---IDIYDPKTQTWE---E 239

  Fly   513 MNCKRSRVALAANM--GKLWAIGGYDGESNL-STVEVYDPETDKWT--FMPPMCAHSGG--VGAG 570
            :|.::|....:..:  .|:     |..:.|: ..:.|:|||.:.|:  |:||   ..||  |..|
plant   240 LNSEQSVSVYSYTVVRNKV-----YFMDRNMPGRLGVFDPEENSWSSVFVPP---REGGFWVRLG 296

  Fly   571 V 571
            |
plant   297 V 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 79/321 (25%)
BACK 143..245 CDD:285009 13/43 (30%)
Kelch 292..339 CDD:128874 11/47 (23%)
KELCH repeat 329..372 CDD:276965 18/53 (34%)
Kelch 340..386 CDD:128874 15/55 (27%)
KELCH repeat 376..417 CDD:276965 16/41 (39%)
Kelch 387..433 CDD:128874 14/46 (30%)
KELCH repeat 423..466 CDD:276965 4/42 (10%)
Kelch 435..480 CDD:128874 6/45 (13%)
Kelch_1 469..514 CDD:279660 13/45 (29%)
KELCH repeat 470..514 CDD:276965 13/44 (30%)
Kelch_1 517..560 CDD:279660 11/47 (23%)
KELCH repeat 517..560 CDD:276965 11/47 (23%)
AT1G27420NP_174062.1 F-box 9..50 CDD:395521 6/24 (25%)
PHA03098 <81..286 CDD:222983 73/312 (23%)
KELCH repeat 100..153 CDD:276965 18/65 (28%)
KELCH repeat 157..202 CDD:276965 17/75 (23%)
KELCH repeat 205..242 CDD:276965 15/56 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

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