DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KLHL18 and AT1G19930

DIOPT Version :10

Sequence 1:NP_650143.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_173422.1 Gene:AT1G19930 / 838582 AraportID:AT1G19930 Length:344 Species:Arabidopsis thaliana


Alignment Length:323 Identity:76/323 - (23%)
Similarity:114/323 - (35%) Gaps:94/323 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 SELFPQVLAAVR------LPLLSPQF-----LADRVAREELIRSSHQCR--DLLDEAKD-----F 266
            ::|...:||.|.      |.|:|.:|     |.:......|:..:..|.  .||....|     |
plant    16 NDLLVNILARVSRLDYPILSLVSKRFSSVLTLPELYQTRSLVGLTENCLYVCLLSSRADRIPSWF 80

  Fly   267 HLMPERRGLLQSFRTRQRSGEFFT-------------------GQIYAVGGLASTGESVSTVEIY 312
            .|.  ||.:|.| .||:.||....                   ..||.:||..|..:| |:|.|.
plant    81 KLC--RRPILAS-DTRKSSGYVLATIPIPHSPPLHRSSLVAVGSNIYNIGGSISQSQS-SSVSIL 141

  Fly   313 DPLTKKWKMGEQMSMMRSRVGVAVLNGKLYAFGGFNGTERLSTVEVYDPRKNKWSQGCAMLCKRS 377
            |..:..|..|..|.:.|.....::|:||:|..||...|                ..||.     .
plant   142 DCWSHTWLEGPSMQVEREYPSASLLDGKIYVTGGCRLT----------------FHGCG-----D 185

  Fly   378 AVGVAALDDCIYVCGGYDGVTSLNTVEVYYPKSNTWKTVAQMM----KYRSAGGVTQLNGYVYAL 438
            ......:|..::.||||.||       .|.|....|.::...|    |:.|:..:..:..|.|  
plant   186 QTDNVVVDGKLHSCGGYKGV-------AYNPNDGRWDSLGSEMNLGLKWSSSCVIENVIYYYY-- 241

  Fly   439 GGHDGLSIFDSVERYDQAEDVW-----VKMSPMLNRRCRLGVATLNGKIYV-----CGGYCGN 491
              |:     ::::.||.....|     :|..|...|...:.:|...||:.:     .|  |||
plant   242 --HN-----ENIKWYDTKVRSWRTLNGLKTLPRFARYANVRLADYGGKMALFWDKFTG--CGN 295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_650143.1 BTB_POZ_KLHL18 20..137 CDD:349556
PHA03098 36..510 CDD:222983 76/323 (24%)
KELCH repeat 329..372 CDD:276965 10/42 (24%)
KELCH repeat 376..417 CDD:276965 10/40 (25%)
KELCH repeat 423..466 CDD:276965 8/47 (17%)
KELCH repeat 470..514 CDD:276965 7/27 (26%)
Kelch_1 517..560 CDD:396078
KELCH repeat 517..560 CDD:276965
AT1G19930NP_173422.1 F-box_AtAFR-like 10..54 CDD:438923 9/37 (24%)
NanM <145..282 CDD:442289 36/173 (21%)
KELCH repeat 225..264 CDD:276965 8/47 (17%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.