DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT5G60570

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001331512.1 Gene:AT5G60570 / 836178 AraportID:AT5G60570 Length:393 Species:Arabidopsis thaliana


Alignment Length:277 Identity:71/277 - (25%)
Similarity:103/277 - (37%) Gaps:52/277 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   325 MSMMRSRVGVAVLNGKLYAFGGFNGTERLSTVE-----VYDPR--------KNKWSQGCAMLC-- 374
            :|.:..:....:.:|.|:|.     .:.|..||     |.|||        |.||.....|.|  
plant    73 LSCVNKKYNKLINSGHLFAL-----RKELGIVEYLVFMVCDPRGWLMFSPMKKKWMVLPKMPCDE 132

  Fly   375 ------KRSAVGVAALDDCIYVCGGYDGVTSLNTVEV--YYPKSNTWKTVAQMMKYRSAGGVTQL 431
                  |.|    .|:||.:.|.|     ..|....:  |..:|..|.....|.:.|.......|
plant   133 CFNHADKES----LAVDDELLVFG-----RELFQFAIWKYSLRSRCWVKCEGMHRPRCLFASGSL 188

  Fly   432 NGYVYALGGHD-GLSIFDSVERYDQAEDVWVKMSPMLNRRCRLGVATLNGKIYVCGGYCG-NSFL 494
            .|.....||.| ..:|..|.|.||.:...|..:..|.:.|.......::||.||.||... |..:
plant   189 GGIAIVAGGTDMNGNILASAELYDSSSGRWEMLPNMHSPRRLCSGFFMDGKFYVIGGMSSPNVSV 253

  Fly   495 RSVECYDPQTDTWKLVTPMNCKRSRVALAANM-----GKLWAIGGYDGESNLSTVEVYDPETDKW 554
            ...|.:|.:|..|:.:..|....:|.|.|..:     .:|:.:     |.:.:.|:.||...:||
plant   254 TFGEEFDLETRKWRKIEGMYPNVNRAAQAPPLVVVVNNELFTL-----EYSTNMVKKYDKVKNKW 313

  Fly   555 TFM---PPMCAHSGGVG 568
            ..|   |||...|.|.|
plant   314 EVMGRLPPMVDSSNGWG 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 53/209 (25%)
BACK 143..245 CDD:285009
Kelch 292..339 CDD:128874 1/13 (8%)
KELCH repeat 329..372 CDD:276965 13/55 (24%)
Kelch 340..386 CDD:128874 17/66 (26%)
KELCH repeat 376..417 CDD:276965 10/42 (24%)
Kelch 387..433 CDD:128874 9/47 (19%)
KELCH repeat 423..466 CDD:276965 12/43 (28%)
Kelch 435..480 CDD:128874 11/45 (24%)
Kelch_1 469..514 CDD:279660 12/45 (27%)
KELCH repeat 470..514 CDD:276965 12/44 (27%)
Kelch_1 517..560 CDD:279660 12/50 (24%)
KELCH repeat 517..560 CDD:276965 12/50 (24%)
AT5G60570NP_001331512.1 F-box 50..93 CDD:366220 4/24 (17%)
PHA03098 <120..325 CDD:222983 56/218 (26%)
KELCH repeat 180..225 CDD:276965 12/44 (27%)
KELCH repeat 228..272 CDD:276965 12/43 (28%)
KELCH repeat 278..320 CDD:276965 11/46 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 57 1.000 Inparanoid score I2576
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.960

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