DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT5G48980

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_199709.1 Gene:AT5G48980 / 834957 AraportID:AT5G48980 Length:399 Species:Arabidopsis thaliana


Alignment Length:295 Identity:67/295 - (22%)
Similarity:97/295 - (32%) Gaps:96/295 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   317 KKWKMGEQMSMMRSRVGVAVLNGK-------------LYAFGGFNGTERLSTVEVYDPRKNKWSQ 368
            ||.|..|:.|.:.....:::||..             |||..........|.|...|.|.:.|::
plant   119 KKKKKKEEKSSVNLLAPISILNSHPVEWSAIISVDHYLYAISADIEKAPYSNVPYLDCRTHTWNE 183

  Fly   369 GCAMLCKRSAVGVAALDDCIYVCGGYDGVTSLNTVEVYYPKSNTWKTV---AQMMKYRSAGGVTQ 430
            ...|   |.|...:..:..:|:.|.::...|||.||||...:.|||.|   .:|.|      :..
plant   184 APRM---RLAHTNSEFEGIVYLPGSFESPDSLNCVEVYNTMTQTWKPVPPEKRMFK------LEN 239

  Fly   431 LNGYVYALGGH-------------------DGLSIFDSVERYDQAEDVWVKMSPMLN------RR 470
            |...:|....|                   .||.:.|:|:.|       ::.|.|:.      |:
plant   240 LEKKIYYKSFHLDSRAGKGLSLSYKSKHLTCGLVVLDTVDSY-------LRSSCMIENIAYFYRK 297

  Fly   471 CRLGVATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGK---LW-- 530
            .......|:|||.|.|...|...|                 |...:.|.|.||...||   ||  
plant   298 GNFIWRGLDGKILVYGKIEGLEGL-----------------PKFSRYSSVQLAEYGGKLVVLWDK 345

  Fly   531 --AIGGY---------------DGESNLSTVEVYD 548
              ...||               :|:.....||.:|
plant   346 YVPASGYKEKMIWCAEISLEKRNGKEIWGNVEWFD 380

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 52/233 (22%)
BACK 143..245 CDD:285009
Kelch 292..339 CDD:128874 6/21 (29%)
KELCH repeat 329..372 CDD:276965 10/55 (18%)
Kelch 340..386 CDD:128874 11/58 (19%)
KELCH repeat 376..417 CDD:276965 15/43 (35%)
Kelch 387..433 CDD:128874 16/48 (33%)
KELCH repeat 423..466 CDD:276965 9/61 (15%)
Kelch 435..480 CDD:128874 11/69 (16%)
Kelch_1 469..514 CDD:279660 10/44 (23%)
KELCH repeat 470..514 CDD:276965 9/43 (21%)
Kelch_1 517..560 CDD:279660 14/54 (26%)
KELCH repeat 517..560 CDD:276965 14/54 (26%)
AT5G48980NP_199709.1 F-box 34..75 CDD:279040
KELCH repeat 148..187 CDD:276965 8/38 (21%)
Kelch_1 187..230 CDD:279660 16/45 (36%)
KELCH repeat 188..230 CDD:276965 15/41 (37%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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