DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT5G38680

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_198684.1 Gene:AT5G38680 / 833858 AraportID:AT5G38680 Length:357 Species:Arabidopsis thaliana


Alignment Length:297 Identity:63/297 - (21%)
Similarity:104/297 - (35%) Gaps:85/297 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 SELFPQVLAAV----RLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFH--------LMPER 272
            |.|:..:|:.|    |..|.||:...:|    .|:..:..|..:......|.        |.|::
plant    32 SRLYYPILSFVSKSFRSLLASPELYKER----SLLNRTEGCLYVCLYLNPFESPSWFTLCLKPDQ 92

  Fly   273 RGLLQSFRTRQRSGEFFT------------GQIYAVG-GLASTGESV---STVEIYDPLTKKWKM 321
            ....::...::.||....            ..:.||| .:.:.|.|:   |:|.|:|..:..|:.
plant    93 ALSSETSNKKKSSGYVLATVSIPHPRLVQRSSLVAVGSNIYNIGRSISPYSSVSIFDCRSHTWRE 157

  Fly   322 GEQMSMMRSRVGVAVLNGKLYAFGGFNGTERL---STVEVYDPRKNKWSQ------------GCA 371
            ...:.:....|...||:||:|..|.....:.|   :|.||:|.:...|..            ...
plant   158 APSLPVELVEVSAGVLDGKIYVAGSCKDGDSLNLKNTFEVFDTKTQVWDHVPIPYNETKHNIYSK 222

  Fly   372 MLCKRSAVGVAALDDCIYVCGGYDGVTSLNTVEVYYPKSNTWKTV-AQMMKYRSAGGVTQLNGYV 435
            .||         :|:..|| |....|.|      |.||...|..| ::|..|:|:....::...:
plant   223 SLC---------IDEKWYV-GAKRKVVS------YNPKKGIWDLVESEMCSYKSSYDYCEIENVL 271

  Fly   436 YALGGHDGLSIFDSVER---------YDQAEDVWVKM 463
            |            |||:         ||.....|.|:
plant   272 Y------------SVEKTWRGTVFRWYDTELGRWRKL 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 63/297 (21%)
BACK 143..245 CDD:285009 9/28 (32%)
Kelch 292..339 CDD:128874 13/50 (26%)
KELCH repeat 329..372 CDD:276965 13/57 (23%)
Kelch 340..386 CDD:128874 11/60 (18%)
KELCH repeat 376..417 CDD:276965 11/41 (27%)
Kelch 387..433 CDD:128874 13/46 (28%)
KELCH repeat 423..466 CDD:276965 9/50 (18%)
Kelch 435..480 CDD:128874 8/38 (21%)
Kelch_1 469..514 CDD:279660
KELCH repeat 470..514 CDD:276965
Kelch_1 517..560 CDD:279660
KELCH repeat 517..560 CDD:276965
AT5G38680NP_198684.1 F-box 18..61 CDD:366220 9/32 (28%)
Kelch_1 122..162 CDD:366584 10/39 (26%)
KELCH repeat 124..161 CDD:276965 10/36 (28%)
KELCH repeat 165..209 CDD:276965 13/43 (30%)
Kelch_1 168..209 CDD:366584 13/40 (33%)
KELCH repeat 216..256 CDD:276965 13/55 (24%)
KELCH repeat 259..301 CDD:276965 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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