DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KLHL18 and AT5G38680

DIOPT Version :10

Sequence 1:NP_650143.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_198684.1 Gene:AT5G38680 / 833858 AraportID:AT5G38680 Length:357 Species:Arabidopsis thaliana


Alignment Length:297 Identity:63/297 - (21%)
Similarity:104/297 - (35%) Gaps:85/297 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   220 SELFPQVLAAV----RLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFH--------LMPER 272
            |.|:..:|:.|    |..|.||:...:|    .|:..:..|..:......|.        |.|::
plant    32 SRLYYPILSFVSKSFRSLLASPELYKER----SLLNRTEGCLYVCLYLNPFESPSWFTLCLKPDQ 92

  Fly   273 RGLLQSFRTRQRSGEFFT------------GQIYAVG-GLASTGESV---STVEIYDPLTKKWKM 321
            ....::...::.||....            ..:.||| .:.:.|.|:   |:|.|:|..:..|:.
plant    93 ALSSETSNKKKSSGYVLATVSIPHPRLVQRSSLVAVGSNIYNIGRSISPYSSVSIFDCRSHTWRE 157

  Fly   322 GEQMSMMRSRVGVAVLNGKLYAFGGFNGTERL---STVEVYDPRKNKWSQ------------GCA 371
            ...:.:....|...||:||:|..|.....:.|   :|.||:|.:...|..            ...
plant   158 APSLPVELVEVSAGVLDGKIYVAGSCKDGDSLNLKNTFEVFDTKTQVWDHVPIPYNETKHNIYSK 222

  Fly   372 MLCKRSAVGVAALDDCIYVCGGYDGVTSLNTVEVYYPKSNTWKTV-AQMMKYRSAGGVTQLNGYV 435
            .||         :|:..|| |....|.|      |.||...|..| ::|..|:|:....::...:
plant   223 SLC---------IDEKWYV-GAKRKVVS------YNPKKGIWDLVESEMCSYKSSYDYCEIENVL 271

  Fly   436 YALGGHDGLSIFDSVER---------YDQAEDVWVKM 463
            |            |||:         ||.....|.|:
plant   272 Y------------SVEKTWRGTVFRWYDTELGRWRKL 296

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_650143.1 BTB_POZ_KLHL18 20..137 CDD:349556
PHA03098 36..510 CDD:222983 63/297 (21%)
KELCH repeat 329..372 CDD:276965 13/57 (23%)
KELCH repeat 376..417 CDD:276965 11/41 (27%)
KELCH repeat 423..466 CDD:276965 9/50 (18%)
KELCH repeat 470..514 CDD:276965
Kelch_1 517..560 CDD:396078
KELCH repeat 517..560 CDD:276965
AT5G38680NP_198684.1 F-box_AtAFR-like 17..59 CDD:438923 8/26 (31%)
NanM 113..307 CDD:442289 47/212 (22%)
KELCH repeat 124..161 CDD:276965 10/36 (28%)
KELCH repeat 165..209 CDD:276965 13/43 (30%)
KELCH repeat 216..256 CDD:276965 13/55 (24%)
KELCH repeat 259..301 CDD:276965 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.