DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT4G39290

DIOPT Version :10

Sequence 1:NP_650143.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_195640.1 Gene:AT4G39290 / 830085 AraportID:AT4G39290 Length:365 Species:Arabidopsis thaliana


Alignment Length:264 Identity:57/264 - (21%)
Similarity:98/264 - (37%) Gaps:46/264 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   284 RSGEFFTG-QIYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRV-GVAVLNGKLYAFGG 346
            |||....| .|||:||......:.|.|.:.|..:..|:....|.:.|... ...|||||:|..||
plant   109 RSGVVAVGSDIYAIGGRNLNNSASSKVMVMDCRSHTWREAPSMRVARDDFPSTCVLNGKIYVIGG 173

  Fly   347 FNGTERLSTVEVYDPRKNKWSQGCAML-------CKRSAVGVAALDDCIYVCGGYDGVTSLNTVE 404
            ....:..:.:||:|.:...|.    .|       |:.....:....:.|:|....:...:..|.|
plant   174 CKNLDSTNWIEVFDTKTQTWE----FLQIPNEEVCRGFNYKIVGYKEAIHVSSLENNRATFMTYE 234

  Fly   405 VYYPKSNTWKT--VAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQAEDVWVKMSPML 467
            ::   ...|:.  ::....:..:..|.:...|.|:         ::.::.||....:|..:...:
plant   235 IH---KGRWREPHLSLSHGFHFSNCVIENVFYRYS---------YEMLQWYDSCRKIWKNLKGFV 287

  Fly   468 NRRCR----LGVATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGK 528
            .|...    .||..:|        |.||..|...||.   |...||:.   |:.. |....:.|:
plant   288 RRSIMNPRGEGVKMVN--------YGGNIVLLWEECV---TIKKKLIW---CEEV-VIEKKHQGE 337

  Fly   529 LWAI 532
            :|.:
plant   338 IWGL 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_650143.1 BTB_POZ_KLHL18 20..137 CDD:349556
PHA03098 36..510 CDD:222983 52/240 (22%)
KELCH repeat 329..372 CDD:276965 13/43 (30%)
KELCH repeat 376..417 CDD:276965 5/42 (12%)
KELCH repeat 423..466 CDD:276965 6/42 (14%)
KELCH repeat 470..514 CDD:276965 12/47 (26%)
Kelch_1 517..560 CDD:396078 3/16 (19%)
KELCH repeat 517..560 CDD:276965 3/16 (19%)
AT4G39290NP_195640.1 F-box_AtAFR-like 13..56 CDD:438923
NanM 98..>242 CDD:442289 34/139 (24%)
KELCH repeat 108..151 CDD:276965 13/41 (32%)
KELCH repeat 155..196 CDD:276965 13/44 (30%)
Blue background indicates that the domain is not in the aligned region.

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