DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KLHL18 and AT4G25710

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_194301.1 Gene:AT4G25710 / 828676 AraportID:AT4G25710 Length:390 Species:Arabidopsis thaliana


Alignment Length:265 Identity:62/265 - (23%)
Similarity:98/265 - (36%) Gaps:71/265 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   301 STGESVSTVEI-YDPLTKKWKMGEQMSMMRSRVGVAVLNGKLYAFGGFNGTERL-----STVEVY 359
            |:|..::.:.| :.|||:::.:             |.:...:|..    |..|.     |:|.|.
plant   116 SSGYVLARIPIPHSPLTQRYSL-------------AAVGSNIYNI----GVTRYHHLTSSSVWVL 163

  Fly   360 DPRKNKWSQGCAMLCKRSAVGVAALDDCIYVCGGY--DGVTSL-NTVEVYYPKSNTWKTVA---- 417
            |.|.:.|.|..::..:...|.|:.||..|||.|.:  ||..|| |:|.|...::.....||    
plant   164 DCRSHTWRQAPSLPVELFRVSVSVLDQKIYVAGLHQEDGSDSLKNSVTVLDTETQVSDRVAIPCS 228

  Fly   418 -----QMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQAEDVWVK----MSPMLNRRCRL 473
                 ::....|.||...|         ..|..:.|    |:..|..|.:    |...:..:|  
plant   229 VSQGKEIFISTSVGGKVNL---------VTGRKVVD----YNPVEGSWEEVGDTMCEFMFSKC-- 278

  Fly   474 GVATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLV-------TPMNCKRSRVALAANMGKL-- 529
             ...:...:|.|      :..|....||.:..||:.:       .|....|:.|:||...|||  
plant   279 -FCVVGNVLYSC------AIDRVFRWYDTEVRTWRNLECLIGGRLPKLSPRAFVSLADYGGKLAV 336

  Fly   530 -WAIG 533
             |..|
plant   337 FWNQG 341

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 52/230 (23%)
BACK 143..245 CDD:285009
Kelch 292..339 CDD:128874 7/38 (18%)
KELCH repeat 329..372 CDD:276965 11/47 (23%)
Kelch 340..386 CDD:128874 13/50 (26%)
KELCH repeat 376..417 CDD:276965 15/43 (35%)
Kelch 387..433 CDD:128874 17/57 (30%)
KELCH repeat 423..466 CDD:276965 10/46 (22%)
Kelch 435..480 CDD:128874 7/48 (15%)
Kelch_1 469..514 CDD:279660 9/51 (18%)
KELCH repeat 470..514 CDD:276965 9/50 (18%)
Kelch_1 517..560 CDD:279660 9/20 (45%)
KELCH repeat 517..560 CDD:276965 9/20 (45%)
AT4G25710NP_194301.1 F-box 29..72 CDD:279040
KELCH repeat 134..176 CDD:276965 11/58 (19%)
Kelch <156..189 CDD:128874 9/32 (28%)
Kelch_2 180..226 CDD:284956 17/45 (38%)
KELCH repeat 180..221 CDD:276965 15/40 (38%)
KELCH repeat 222..268 CDD:276965 11/58 (19%)
KELCH repeat 274..311 CDD:276965 8/45 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X9
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.