DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment KLHL18 and AT3G08810

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_187493.1 Gene:AT3G08810 / 820028 AraportID:AT3G08810 Length:343 Species:Arabidopsis thaliana


Alignment Length:188 Identity:43/188 - (22%)
Similarity:72/188 - (38%) Gaps:33/188 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 VYYPK----SNTWKTV---AQMMKYRSAGGVTQLNGYVYALGGHDGLSIF------DSVERYDQA 456
            :|||.    |.:::::   .::.|.||..|.|::..|| .|....|...|      |....|::.
plant    41 LYYPTLSHVSESFRSLLASPELYKARSLSGNTEICLYV-CLRCSTGYRWFSLSRKPDQTLTYEER 104

  Fly   457 EDVWVKM--------SPMLNRRCRLGVATLNGKIY-VCGGYCGNSFLRSVECYDPQTDTWKLVTP 512
            :.....:        ||.:.....:.|.:   .|| :||.....|...||...|.|:.||:....
plant   105 KSSGYALARVPIPGGSPNVRSSSLVAVGS---DIYNICGSINKASSSSSVSILDCQSHTWREAPS 166

  Fly   513 MNCKRSRVALAANMGKLWAIGGYDGESNLSTVEVYDPETDKWTFMPPMCAHSGGVGAG 570
            :..:.|.::.:...|.....|..|...|...|..|:.:..:|.       |..|:|||
plant   167 LPVELSSISASVRDGNQGGHGYSDSRKNSFKVFAYNSKEGRWD-------HLVGLGAG 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 30/126 (24%)
BACK 143..245 CDD:285009
Kelch 292..339 CDD:128874
KELCH repeat 329..372 CDD:276965
Kelch 340..386 CDD:128874
KELCH repeat 376..417 CDD:276965 4/18 (22%)
Kelch 387..433 CDD:128874 9/34 (26%)
KELCH repeat 423..466 CDD:276965 12/56 (21%)
Kelch 435..480 CDD:128874 9/58 (16%)
Kelch_1 469..514 CDD:279660 12/45 (27%)
KELCH repeat 470..514 CDD:276965 12/44 (27%)
Kelch_1 517..560 CDD:279660 8/42 (19%)
KELCH repeat 517..560 CDD:276965 8/42 (19%)
AT3G08810NP_187493.1 F-box 25..68 CDD:279040 6/26 (23%)
Kelch_6 126..169 CDD:290672 12/45 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.