DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AT2G29860

DIOPT Version :10

Sequence 1:NP_650143.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_180547.1 Gene:AT2G29860 / 817536 AraportID:AT2G29860 Length:240 Species:Arabidopsis thaliana


Alignment Length:87 Identity:27/87 - (31%)
Similarity:40/87 - (45%) Gaps:2/87 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly   475 VATLNGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALAANMGKLWAIGGYDGES 539
            |.|:..||||.||| ....:.:|...|.:..||..:..|...|.........|:::.|||.. :.
plant   114 VVTIGYKIYVMGGY-NYQPVSTVIIIDCRFHTWHYLQDMQRARYHATPGVIDGRIYVIGGRK-KQ 176

  Fly   540 NLSTVEVYDPETDKWTFMPPMC 561
            :...|||:|..|:.|..:|..|
plant   177 DADWVEVFDVTTESWETVPTQC 198

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_650143.1 BTB_POZ_KLHL18 20..137 CDD:349556
PHA03098 36..510 CDD:222983 13/34 (38%)
KELCH repeat 329..372 CDD:276965
KELCH repeat 376..417 CDD:276965
KELCH repeat 423..466 CDD:276965
KELCH repeat 470..514 CDD:276965 13/38 (34%)
Kelch_1 517..560 CDD:396078 12/42 (29%)
KELCH repeat 517..560 CDD:276965 12/42 (29%)
AT2G29860NP_180547.1 F-box_AtAFR-like 23..63 CDD:438923
NanM 109..>195 CDD:442289 25/82 (30%)
KELCH repeat 111..151 CDD:276965 13/37 (35%)
KELCH repeat 155..195 CDD:276965 11/40 (28%)
Blue background indicates that the domain is not in the aligned region.

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