DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and AFR

DIOPT Version :10

Sequence 1:NP_650143.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_565572.1 Gene:AFR / 816990 AraportID:AT2G24540 Length:372 Species:Arabidopsis thaliana


Alignment Length:171 Identity:47/171 - (27%)
Similarity:77/171 - (45%) Gaps:21/171 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly   405 VYYPKSNTW-KTVA--QMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQAEDVWVKMSPM 466
            :|...|::| ||:.  :.:..:.:..::....:|:|.........:.|:   |.|...|..:.||
plant    51 LYRSVSSSWNKTITNPRFLFSKQSLSISSPYLFVFAFNKSTARIQWQSL---DLASGRWFVLPPM 112

  Fly   467 LNRRCR------LGVATL--NGKIYVCGGYCGNSFLRSVECYDPQTDTWKLVTPMNCKRSRVALA 523
            .|...:      |..|::  .||::|.||...|   ||...|...|:.|..::||...|:.....
plant   113 PNSFTKISSPHALSCASMPRQGKLFVLGGGDVN---RSAVVYTALTNRWSCISPMMSPRTYFVSG 174

  Fly   524 ANMGKLWAIGGYDGESNLSTVEV--YDPETDKWTFMP--PM 560
            ...||:.|:||..|.:..:|.||  |||:.|.||.:.  ||
plant   175 NVNGKIMAVGGSVGGNGEATTEVESYDPDNDTWTVVKKLPM 215

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_650143.1 BTB_POZ_KLHL18 20..137 CDD:349556
PHA03098 36..510 CDD:222983 27/115 (23%)
KELCH repeat 329..372 CDD:276965
KELCH repeat 376..417 CDD:276965 5/12 (42%)
KELCH repeat 423..466 CDD:276965 6/42 (14%)
KELCH repeat 470..514 CDD:276965 14/51 (27%)
Kelch_1 517..560 CDD:396078 16/46 (35%)
KELCH repeat 517..560 CDD:276965 16/46 (35%)
AFRNP_565572.1 F-box_AtAFR-like 28..68 CDD:438923 5/16 (31%)
NanM 81..332 CDD:442289 42/141 (30%)
KELCH repeat 168..214 CDD:276965 16/45 (36%)
KELCH repeat 217..259 CDD:276965
Blue background indicates that the domain is not in the aligned region.

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