DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and C53A5.6

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_001256597.1 Gene:C53A5.6 / 183737 WormBaseID:WBGene00008266 Length:573 Species:Caenorhabditis elegans


Alignment Length:439 Identity:111/439 - (25%)
Similarity:192/439 - (43%) Gaps:50/439 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly   145 GIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEFLALDCEQLLELMRRDELNVRTEEVIFEACM 209
            |.:|...:::...:.|.|...:....:|:|:..:.:   |:.:.:   :....:::.:..||   
 Worm   162 GHQTMQLALLKNSIEDQAPTNLGNKISKISELSKQV---CDDISD---KFAATIKSLQNYFE--- 217

  Fly   210 KWVKYAEDKRSELFPQVLAAVRLPLLSPQFLADRVAREELIRSSHQCRDLLDEAKDFHLMPERRG 274
            |..|.:...|...|..:.|.:       :.::|.:|   |::.:....|.|:...:.|    .|.
 Worm   218 KHEKLSPPGRKTHFNNIEAEM-------EKISDTIA---LVKDAGTRLDFLNNEIEEH----DRI 268

  Fly   275 LLQSFRTRQRSGEFFTGQ--IYAVGGLASTGESVSTVEIYDPLTKKWKMGEQMSMMRSRVGVAVL 337
            :.|:.:...::...|..|  :.......|..|.: .:.:|||..:.|....:|...:|...||..
 Worm   269 VFQTKQPVTKANFVFASQDPVLVADRKQSAREPL-LIGVYDPKNRGWTPVGRMPNPKSNYAVACS 332

  Fly   338 NGKLYAFGGFNGTERLSTVEVYDPRK------NKWSQGCAMLCKRSAVGVAALDDCIYVCGGYDG 396
            ..::|..||.|....|:.||:||..|      ||..:|..    |::.|:.  ::.:||.||||.
 Worm   333 KSQIYIVGGMNNGSWLNNVEMYDREKNLRRDCNKMKRGRT----RTSAGIH--NNKMYVAGGYDS 391

  Fly   397 VTSLNTVEVYYPKSNTWKTVAQMMKYRSAGGVTQLNGYVYALGGHDGLSIFDSVERYDQAEDVWV 461
             |.:|:||||......||....:.:.|:...|...||.||.|||.:|....:.:|:..:....:.
 Worm   392 -TYMNSVEVYDTDQGEWKDGPSLQRPRADAAVVPCNGEVYVLGGFNGKEYEEKIEKLSEPGQKFE 455

  Fly   462 KMSPMLNRRCRLGVATLNGKIYVCGGYCGNS-FLRSVECYDPQTDTWKLVTPMNCKRSRVALAAN 525
            .:..|...|...|.....|:||:.||:..:| .||||..|||.|.:|:....::..|....|.:.
 Worm   456 IVGDMQGSRAGFGSCAFRGRIYIAGGWSNSSNTLRSVRSYDPLTKSWRDEPSLSKDRKYFTLHST 520

  Fly   526 MGKLWAIGG-YDGESNLSTVEVYDPETDKWTFMP---PMCAHSGGVGAG 570
            ...::||.| .|..|.::.||.:|||...|..:.   ||      ||||
 Worm   521 NEAIYAIRGCADNWSLINEVERFDPEKRAWEIISCSGPM------VGAG 563

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045
PHA03098 36..510 CDD:222983 92/373 (25%)
BACK 143..245 CDD:285009 15/99 (15%)
Kelch 292..339 CDD:128874 11/48 (23%)
KELCH repeat 329..372 CDD:276965 16/48 (33%)
Kelch 340..386 CDD:128874 15/51 (29%)
KELCH repeat 376..417 CDD:276965 16/40 (40%)
Kelch 387..433 CDD:128874 16/45 (36%)
KELCH repeat 423..466 CDD:276965 11/42 (26%)
Kelch 435..480 CDD:128874 10/44 (23%)
Kelch_1 469..514 CDD:279660 17/45 (38%)
KELCH repeat 470..514 CDD:276965 17/44 (39%)
Kelch_1 517..560 CDD:279660 13/46 (28%)
KELCH repeat 517..560 CDD:276965 13/46 (28%)
C53A5.6NP_001256597.1 zf-RING_5 8..50 CDD:373177
modified RING-HC finger (C3HC3D-type) 9..45 CDD:319361
KELCH repeat 325..367 CDD:276965 14/41 (34%)
PHA03098 <336..562 CDD:222983 74/238 (31%)
KELCH repeat 371..413 CDD:276965 16/48 (33%)
KELCH repeat 417..461 CDD:276965 11/43 (26%)
KELCH repeat 464..508 CDD:276965 17/43 (40%)
KELCH repeat 512..554 CDD:276965 13/41 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24412
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X9
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.010

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