DRSC/TRiP Functional Genomics Resources

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Protein Alignment KLHL18 and math-20

DIOPT Version :9

Sequence 1:NP_001262494.1 Gene:KLHL18 / 41458 FlyBaseID:FBgn0037978 Length:575 Species:Drosophila melanogaster
Sequence 2:NP_494146.1 Gene:math-20 / 173562 WormBaseID:WBGene00016555 Length:436 Species:Caenorhabditis elegans


Alignment Length:221 Identity:38/221 - (17%)
Similarity:82/221 - (37%) Gaps:61/221 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 SDNSQVEDQY------FVYKHDKLFGESFPLFKEI---RRMGKLCDVTLKVEDQTFSAH----RV 55
            ||.|.:|:.:      .:.|:::.........||:   |::...|:...|:...:...|    :.
 Worm   165 SDYSDLEEHFNIPWRMQIEKYNEFLATYLCCDKEMYEGRKLSIECEYEFKLISASGKLHSKQNKA 229

  Fly    56 VLAAT---IPYFYAMFTNNMAESRIKEITMKESAIEPSALESLINYVYSGQVRIDNQNVQNLMVG 117
            :..|:   ||.|.:.  |:|.:                      :||.:|.:.::        |.
 Worm   230 IFGASNRGIPNFISW--NDMEK----------------------DYVTNGSIDVE--------VH 262

  Fly   118 ASFLQLSNVRDACASFLISRFHPHNVLGIRTFADSMICRQLIDAADKYIDQNFAKVSQSEEF--L 180
            ...:|::.:.....||::|    |.|..:.:..:..|.  ..|...::......|:.:.:.|  |
 Worm   263 VKIIQITELSCQEKSFVLS----HTVKNMSSIEEGRII--FSDTQTRFNILWKLKIRKQDGFFEL 321

  Fly   181 ALDCEQLLELMRRDELNVRTEEVIFE 206
            .|.|::.|...|:..:     |.:|:
 Worm   322 FLLCDKQLCKSRKWSI-----ETVFQ 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
KLHL18NP_001262494.1 BTB 29..135 CDD:279045 19/115 (17%)
PHA03098 36..510 CDD:222983 30/180 (17%)
BACK 143..245 CDD:285009 12/66 (18%)
Kelch 292..339 CDD:128874
KELCH repeat 329..372 CDD:276965
Kelch 340..386 CDD:128874
KELCH repeat 376..417 CDD:276965
Kelch 387..433 CDD:128874
KELCH repeat 423..466 CDD:276965
Kelch 435..480 CDD:128874
Kelch_1 469..514 CDD:279660
KELCH repeat 470..514 CDD:276965
Kelch_1 517..560 CDD:279660
KELCH repeat 517..560 CDD:276965
math-20NP_494146.1 MATH 12..125 CDD:279285
MATH 154..265 CDD:279285 21/131 (16%)
MATH 284..397 CDD:279285 12/66 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

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