DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC2 and slc25a48

DIOPT Version :9

Sequence 1:NP_731657.2 Gene:GC2 / 41449 FlyBaseID:FBgn0037970 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001002367.1 Gene:slc25a48 / 436640 ZFINID:ZDB-GENE-040718-60 Length:309 Species:Danio rerio


Alignment Length:313 Identity:92/313 - (29%)
Similarity:145/313 - (46%) Gaps:55/313 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 GGVAGIIGVACVYPLDMVKTRLQNQTIGPNGERMYTSIADCFRKTIASEGYFGMYRGSAVNIVLI 91
            |.:.|...|...:|||.||||||   .|...:..:..:...::|    |...|.::|.:..:..|
Zfish    12 GWIGGASSVIVGHPLDTVKTRLQ---AGKGYKNTFHCVVTIYKK----ENVIGFFKGLSFPLASI 69

  Fly    92 TPEKAI---------KLTANDFFRYHLASDDGVIPLSR--ATLAGGLAGLFQIVVTTPMELLKI- 144
            |...::         :|.:.  :||    .||..|.|.  .|:|..|.||..:.|..|::|:|| 
Zfish    70 TLYNSMVFGFFSNTQRLISK--YRY----GDGRHPCSMLDLTVASMLTGLVSVGVGAPVDLVKIR 128

  Fly   145 -QMQDAGRVAAADRAAGREVKTITALGL------------TKTLLRERGIFGLYKGVGATGVRDI 196
             |||....:|.....||.....:.::|:            ..|:|:..||.|||:|.||..:|||
Zfish   129 LQMQTQPVLAENFNLAGNGSVPLRSMGIQSQSFYRGPLHCISTVLQNEGIQGLYRGAGAMILRDI 193

  Fly   197 T-FSMVYFPLMAWINDQGPRKSDGSGEAVFYWSLIAGLLSGMTSAFMVTPFDVVKTRLQADG--E 258
            . :::.:.|...:.|...| ..:.|......|  :||.|:|..|....||.||||:|||||.  :
Zfish   194 PGYALYFIPYTLFCNWLNP-DDNSSPPPCCIW--LAGGLAGSISWVTATPSDVVKSRLQADAMHQ 255

  Fly   259 KKFKGIMDCVNRTLKEEGISAFFKGG---------LCRIMVLAPLFGIAQMFY 302
            :|:|||:.|:.::.:.|||..||:|.         :|..|.|.  :.::..|:
Zfish   256 RKYKGILHCIMQSYRTEGIHVFFRGATVNAIRGFPMCATMFLG--YELSLQFF 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC2NP_731657.2 PTZ00169 14..289 CDD:240302 89/298 (30%)
Mito_carr 16..106 CDD:278578 20/87 (23%)
Mito_carr 123..203 CDD:278578 29/94 (31%)
Mito_carr 228..302 CDD:278578 30/84 (36%)
slc25a48NP_001002367.1 Solcar 1 3..86 19/80 (24%)
PTZ00169 6..289 CDD:240302 88/292 (30%)
Mito_carr 8..91 CDD:278578 20/87 (23%)
Solcar 2 99..209 32/109 (29%)
Mito_carr 106..210 CDD:278578 31/103 (30%)
Solcar 3 218..305 31/90 (34%)
Mito_carr 224..307 CDD:278578 32/87 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0762
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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