DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GC2 and slc25a40

DIOPT Version :10

Sequence 1:NP_731657.2 Gene:GC2 / 41449 FlyBaseID:FBgn0037970 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_001002360.1 Gene:slc25a40 / 436633 ZFINID:ZDB-GENE-040718-52 Length:353 Species:Danio rerio


Alignment Length:336 Identity:83/336 - (24%)
Similarity:137/336 - (40%) Gaps:66/336 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PQKFNVFPKIINGGVAGIIGVACVYPLDMVKTRLQNQ--------------------TIGPNGER 59
            |.....|.:::......||....|.|||:||.|||.|                    .:..||..
Zfish    11 PGDITPFQQMMASCSGAIITSLLVTPLDVVKIRLQAQKNPFPKGKCFVYCNGLMDHICVCENGNT 75

  Fly    60 M--------YTSIADCFRKTIASEGYFGMYRGSAVNIVLITPEKAIKLTAND----FFRYHLASD 112
            .        ::...|.|.|.|..||...::.|....:::..|...|..|..|    ..:..:...
Zfish    76 KVWYKAPGHFSGTLDAFLKIIRMEGIRSLWSGLPPTLIMAVPATVIYFTCYDQLFALLKLKMGDR 140

  Fly   113 DGVIPLSRATLAGGLAGLFQIVVTTPMELLKIQMQDAGRVAAADRAAGREVKTITALGLTKTLLR 177
            ..:.||    .||.:|.:....|.:|:||::.:||       :::.:.||:..:     .::.|:
Zfish   141 SDLAPL----FAGAIARVGSATVISPLELIRTKMQ-------SEKQSYREMSAV-----IRSALK 189

  Fly   178 ERGIFGLYKGVGATGVRDITFSMVYFPLMAWINDQGPR----KSDGSGEAVFYWSLIAGLLSGMT 238
            ..|:..|::|.|.|.:||:.||.:|     |.|.:..:    |.....|.....:..||.|||..
Zfish   190 NEGLRSLWRGWGPTLLRDVPFSAMY-----WFNYEKGKWWLCKRYSCSEPTVAITFTAGALSGSI 249

  Fly   239 SAFMVTPFDVVKTRLQAD-GEKKFKGIMDCVN--------RTLKEEGISAFFKGGLCRIMVLAPL 294
            ::.:..|||||||:.|.: ||.:...:...|:        |.:.|.|:|..|.|.:.|::.:||.
Zfish   250 ASIITLPFDVVKTKRQVEMGELQTMKLSTQVSSSTCSVMKRIVAENGVSGLFAGFMPRLIKVAPA 314

  Fly   295 FGIAQMFYFLG 305
            ..|....|..|
Zfish   315 CAIMISTYEFG 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC2NP_731657.2 Mito_carr 16..106 CDD:395101 26/121 (21%)
Mito_carr 123..203 CDD:395101 21/79 (27%)
Mito_carr 228..302 CDD:395101 26/82 (32%)
slc25a40NP_001002360.1 Mito_carr 12..129 CDD:395101 26/116 (22%)
Solcar 1 14..132 26/117 (22%)
Solcar 2 140..224 26/104 (25%)
Mito_carr 143..229 CDD:395101 27/106 (25%)
Mito_carr 232..333 CDD:395101 29/94 (31%)
Solcar 3 234..328 28/92 (30%)

Return to query results.
Submit another query.