DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC2 and slc-25A18.1

DIOPT Version :9

Sequence 1:NP_731657.2 Gene:GC2 / 41449 FlyBaseID:FBgn0037970 Length:319 Species:Drosophila melanogaster
Sequence 2:NP_510493.2 Gene:slc-25A18.1 / 181596 WormBaseID:WBGene00008979 Length:313 Species:Caenorhabditis elegans


Alignment Length:313 Identity:172/313 - (54%)
Similarity:219/313 - (69%) Gaps:17/313 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 FNVFPKIINGGVAGIIGVACVYPLDMVKTRLQNQTIGPNGERMYTSIADCFRKTIASEG------ 76
            |:..|||:|||:||||||:||:|:|:|||||||||:|.:|:..|:.||||.::|..|.|      
 Worm     7 FSYGPKIMNGGLAGIIGVSCVFPIDLVKTRLQNQTVGADGKLQYSGIADCAKQTWRSGGASTLAK 71

  Fly    77 YFGMYRGSAVNIVLITPEKAIKLTANDFFRYHLASD-DGVIPLSRATLAGGLAGLFQIVVTTPME 140
            :.|||.||.|||:||||||||||.||||||:.||.: :..:.:.|..|||||||:|||.||||||
 Worm    72 FRGMYSGSGVNILLITPEKAIKLVANDFFRHKLAKEGEKQLSVGRGMLAGGLAGMFQISVTTPME 136

  Fly   141 LLKIQMQDAGRVAAADRAAGREVKTITALGLTKTLLRERGIFGLYKGVGATGVRDITFSMVYFPL 205
            ||||||||.||.....:      :.::|..||..|::|.||..||||:.:|..||:|||::||||
 Worm   137 LLKIQMQDQGRTLKPGQ------QKLSATQLTMKLVKENGIAALYKGLSSTLARDVTFSVIYFPL 195

  Fly   206 MAWINDQGPRKSDGSGEAVFYWSLIAGLLSGMTSAFMVTPFDVVKTRLQ----ADGEKKFKGIMD 266
            .|:::...|||.||||:||||.|.:|||.||..|:|.|||.||:|||:|    ...|..:|.|.|
 Worm   196 FAYLDSLAPRKPDGSGDAVFYGSFLAGLTSGAASSFCVTPLDVIKTRMQTINKGANEIVYKNIPD 260

  Fly   267 CVNRTLKEEGISAFFKGGLCRIMVLAPLFGIAQMFYFLGVGEKILGIERTKSV 319
            ......|.||..|.|||..||:||:||||||||..|::||.||||||::...|
 Worm   261 AFVTIFKNEGPKALFKGAACRMMVMAPLFGIAQTVYYIGVAEKILGIQKATHV 313

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC2NP_731657.2 PTZ00169 14..289 CDD:240302 152/281 (54%)
Mito_carr 16..106 CDD:278578 58/93 (62%)
Mito_carr 123..203 CDD:278578 43/79 (54%)
Mito_carr 228..302 CDD:278578 40/77 (52%)
slc-25A18.1NP_510493.2 PTZ00169 3..278 CDD:240302 149/276 (54%)
Mito_carr 5..108 CDD:278578 62/100 (62%)
Mito_carr 110..199 CDD:278578 49/94 (52%)
Mito_carr 215..296 CDD:278578 42/80 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167847
Domainoid 1 1.000 128 1.000 Domainoid score I3298
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 352 1.000 Inparanoid score I1327
Isobase 1 0.950 - 0.878984 Normalized mean entropy S1412
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm4728
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - O PTHR45678
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X982
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1514.760

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