DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GC1 and ucp1

DIOPT Version :10

Sequence 1:NP_650134.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_955817.1 Gene:ucp1 / 83908 ZFINID:ZDB-GENE-010503-1 Length:309 Species:Danio rerio


Alignment Length:299 Identity:73/299 - (24%)
Similarity:118/299 - (39%) Gaps:56/299 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LPQPQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGER---------MYNSMF 66
            :|.|      |..|:::.|.|..|.....||||..|.|||.|     ||:         .|..:|
Zfish     9 VPPP------LTVKVLSAGTAACIADLVTFPLDTAKVRLQIQ-----GEKAVTGAAKGIRYKGVF 62

  Fly    67 DCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGA 131
            .......:.||...:|.|....:.......:|::...|..:...|.......:..:::||...||
Zfish    63 GTISTMMRTEGPRSLYNGLVAGLQRQMAFASIRIGLYDNVKSFYTRGKDNPNVAVRILAGCTTGA 127

  Fly   132 FQIIVTTPMELLKIQMQDAGRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKG-------- 188
            ..:.:..|.:::|::.|      |...|.|.........|...|:.:.:|:.||:||        
Zfish   128 MAVSMAQPTDVVKVRFQ------AQMNLQGVGRRYNGTMQAYRQIFQLEGLRGLWKGTLPNITRN 186

  Fly   189 --IGATGLRDVTFSIIYFPLF--ATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDV 249
              :..|.|  |::.:|...:.  ..|:|..|            |.|::...||....:..:|.||
Zfish   187 ALVNCTEL--VSYDLIKEAILKHRLLSDNLP------------CHFVSAFGAGFITTVIASPVDV 237

  Fly   250 VKTRLQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKG 288
            ||||.  :....|  ::...::|....|..||||||:||
Zfish   238 VKTRY--MNSPPG--QYSSSTNCAWTMLTKEGPTAFYKG 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_650134.1 PTZ00169 37..294 CDD:240302 66/273 (24%)
ucp1NP_955817.1 Mito_carr 10..110 CDD:395101 27/110 (25%)
Mito_carr 111..208 CDD:395101 21/104 (20%)
Mito_carr 213..299 CDD:395101 23/76 (30%)

Return to query results.
Submit another query.