DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GC1 and Slc25a18

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001074517.1 Gene:Slc25a18 / 71803 MGIID:1919053 Length:320 Species:Mus musculus


Alignment Length:314 Identity:162/314 - (51%)
Similarity:214/314 - (68%) Gaps:20/314 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGYFGM 81
            |..::..|:|||||||::|||||||:||.||||||||    |:.:|..|.||..||.:|||:.||
Mouse     9 QDLSISAKLINGGIAGLVGVTCVFPIDLAKTRLQNQQ----GKDVYRGMTDCLMKTARAEGFLGM 69

  Fly    82 YRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQ 146
            |||:.||:.|:||||||||.|||:.|..|.....:..|..:|:||..||..|:::|.|||:||||
Mouse    70 YRGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQ 134

  Fly   147 MQDAGRVAAAAKLAG--------------KTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDV 197
            :|||||:|...:.:.              .|..:.|||.:|.:|::.:|:.|||:|:|||.|||:
Mouse   135 LQDAGRLAVCHQASASATPTSRPYSTGSTSTHRRPSATLIARELLRTQGLSGLYRGLGATLLRDI 199

  Fly   198 TFSIIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADG 262
            .||||||||||.||.||.  ::.:|:|.|..||:||..|||.||:||.|.||:|||:|.:||..|
Mouse   200 PFSIIYFPLFANLNQLGV--SELTGKASFTHSFVAGCTAGSVAAVAVTPLDVLKTRIQTLKKGLG 262

  Fly   263 EKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLL 316
            |..:.|::||..|....|||.||.||..||.:||||||||||.||::|:.|.:|
Mouse   263 EDTYSGVTDCARKLWTQEGPAAFMKGAGCRALVIAPLFGIAQGVYFIGIGERIL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 47/76 (62%)
Mito_carr 115..213 CDD:278578 50/111 (45%)
Mito_carr 226..307 CDD:278578 46/80 (58%)
Slc25a18NP_001074517.1 Mito_carr 11..99 CDD:365909 55/91 (60%)
Solcar 1 11..97 55/89 (62%)
Solcar 2 105..215 50/109 (46%)
Mito_carr 111..209 CDD:365909 44/97 (45%)
Solcar 3 224..313 50/88 (57%)
Mito_carr 225..307 CDD:365909 46/81 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4855
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 354 1.000 Inparanoid score I2232
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53612
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8687
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - LDO PTHR45678
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4126
SonicParanoid 1 1.000 - - X982
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.860

Return to query results.
Submit another query.