DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and Slc25a18

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001037745.2 Gene:Slc25a18 / 681896 RGDID:1590470 Length:320 Species:Rattus norvegicus


Alignment Length:314 Identity:161/314 - (51%)
Similarity:215/314 - (68%) Gaps:20/314 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGYFGM 81
            |..::..|:|||||||::|||||||:||.||||||||    |:.:|..|.||..||.:|||:.||
  Rat     9 QDLSITAKLINGGIAGLVGVTCVFPIDLAKTRLQNQQ----GKDVYKGMTDCLVKTARAEGFLGM 69

  Fly    82 YRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQ 146
            |||:.||:.|:||||||||.|||:.|..|.....:..|..:|:||..||..|:::|.|||:||||
  Rat    70 YRGAAVNLTLVTPEKAIKLAANDFLRQLLMQDGTQRNLKMEMLAGCGAGICQVVITCPMEMLKIQ 134

  Fly   147 MQDAGRVAAAAKLAG--------------KTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDV 197
            :|||||:|...:.:.              .|..:.|||.:|.:|::.:|:.|||:|:|||.|||:
  Rat   135 LQDAGRLAVCQQASASATPTSRPYSTGSTSTHRRPSATLIAWELLRTQGLSGLYRGLGATLLRDI 199

  Fly   198 TFSIIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADG 262
            .||||||||||.||.||.  ::.:|:|.|..||:||.||||.:|:||.|.||:|||:|.:||..|
  Rat   200 PFSIIYFPLFANLNQLGV--SELTGKASFTHSFVAGCAAGSVSAVAVTPLDVLKTRIQTLKKGLG 262

  Fly   263 EKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLL 316
            |..::|::||..|....||..||.||..||.:||||||||||.||::|:.|.:|
  Rat   263 EDTYRGVTDCARKLWTQEGAAAFMKGAGCRALVIAPLFGIAQGVYFIGIGERIL 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 47/76 (62%)
Mito_carr 115..213 CDD:278578 50/111 (45%)
Mito_carr 226..307 CDD:278578 45/80 (56%)
Slc25a18NP_001037745.2 Mito_carr 9..102 CDD:395101 57/96 (59%)
Solcar 1 11..97 55/89 (62%)
Solcar 2 105..215 50/109 (46%)
Mito_carr 111..209 CDD:395101 44/97 (45%)
Mito_carr 222..307 CDD:395101 47/84 (56%)
Solcar 3 224..313 49/88 (56%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 137 1.000 Domainoid score I4758
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 353 1.000 Inparanoid score I2180
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm8923
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - LDO PTHR45678
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X982
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.840

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