DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc25a18

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:XP_001923807.2 Gene:slc25a18 / 568740 ZFINID:ZDB-GENE-041111-192 Length:324 Species:Danio rerio


Alignment Length:324 Identity:183/324 - (56%)
Similarity:229/324 - (70%) Gaps:29/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGYFGM 81
            ::.:|..|:||||:||::|||||||:||.||||||||    |.|:|:.|.||..||.|.||||||
Zfish     4 KKLSLPAKLINGGVAGLVGVTCVFPIDLAKTRLQNQQ----GARVYSGMLDCLAKTIKMEGYFGM 64

  Fly    82 YRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQ 146
            |||:.||:.|:||||||||.|||.||.|| :|||||||..:::||..||..|::||||||:||||
Zfish    65 YRGAAVNLTLVTPEKAIKLAANDVFRQKL-SKDGKLPLWGEILAGCGAGTCQVVVTTPMEMLKIQ 128

  Fly   147 MQDAGR------VAAAAKLAGKTVEKV---------------SATQLASQLIKDKGIFGLYKGIG 190
            :|||||      |||:|..:|.|...|               |||::..:|:|.:|:.|||||.|
Zfish   129 LQDAGRLAAQRTVAASAPASGPTPSLVASQTAHPGTSAPPRRSATRITVELLKTRGLRGLYKGAG 193

  Fly   191 ATGLRDVTFSIIYFPLFATLNDLGPRRNDGSGE--AVFWCSFLAGLAAGSTAALAVNPFDVVKTR 253
            ||.:|||.||:|||||||.||.:| |..|...:  |.|..||:||..|||.||:||.|.||:|||
Zfish   194 ATLMRDVPFSMIYFPLFANLNAVG-RAEDCKAQERAPFLQSFMAGCMAGSVAAVAVTPLDVIKTR 257

  Fly   254 LQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLLG 317
            ||.::|.:||..::||.||..:.||.|||:||.||..||.:||||||||||.||:|||.|.|:|
Zfish   258 LQTLQKGEGEDSYRGIIDCAQRILKREGPSAFLKGATCRALVIAPLFGIAQGVYFLGVGEHLIG 321

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 52/76 (68%)
Mito_carr 115..213 CDD:278578 60/118 (51%)
Mito_carr 226..307 CDD:278578 48/80 (60%)
slc25a18XP_001923807.2 Mito_carr 4..97 CDD:278578 62/97 (64%)
Mito_carr 97..210 CDD:278578 55/112 (49%)
Mito_carr 226..311 CDD:278578 49/84 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4914
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2237
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm6363
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR45678
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1211.940

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