DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc25a55b

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_001003448.1 Gene:slc25a55b / 445054 ZFINID:ZDB-GENE-040801-184 Length:331 Species:Danio rerio


Alignment Length:324 Identity:172/324 - (53%)
Similarity:225/324 - (69%) Gaps:28/324 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGYFGM 81
            |..:|..|:||||:||::|||||||:||.|||||||:   ..:|:|.:|.||..||.::||||||
Zfish     4 QPISLPAKLINGGVAGLVGVTCVFPIDLAKTRLQNQR---GSQRVYKNMMDCLIKTVRSEGYFGM 65

  Fly    82 YRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQ 146
            |||:.||:.|:||||||||.|||:||.:|:..|.||.:..:|:||..||..|:|||||||:||||
Zfish    66 YRGAAVNLTLVTPEKAIKLAANDFFRQRLSRGDLKLSVFQEMLAGCGAGMCQVIVTTPMEMLKIQ 130

  Fly   147 MQDAGRVAA---------AAKLAG--------------KTVEKVSATQLASQLIKDKGIFGLYKG 188
            :|||||:.|         ..||..              .::.||||.|:|.:|.:.|||.|||||
Zfish   131 LQDAGRLVAQQRNVPILHTVKLGAASPVLNYSYSVGPVSSIRKVSAVQIAQELFRTKGIQGLYKG 195

  Fly   189 IGATGLRDVTFSIIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTR 253
            :|||.:||:.||::||||||.:|.||....|  .:..|:.||::|..||.|||:||:|.||||||
Zfish   196 LGATLMRDIPFSVVYFPLFAHINQLGKTSED--SDVPFYWSFISGCVAGCTAAVAVSPCDVVKTR 258

  Fly   254 LQAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLLG 317
            ||::.|:..|..:.|:.|||.|.::.|||:||.||..||.:||||||||||.||::||.|.|||
Zfish   259 LQSLNKSANEDTYNGVVDCIRKIMRKEGPSAFLKGAGCRALVIAPLFGIAQVVYFIGVGEFLLG 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 48/76 (63%)
Mito_carr 115..213 CDD:278578 56/120 (47%)
Mito_carr 226..307 CDD:278578 46/80 (58%)
slc25a55bNP_001003448.1 Mito_carr 4..96 CDD:278578 58/94 (62%)
Mito_carr 100..214 CDD:278578 52/113 (46%)
Mito_carr 227..312 CDD:278578 46/84 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4914
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2237
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm6363
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - O PTHR45678
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.840

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