DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc25a55a

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_998573.1 Gene:slc25a55a / 406717 ZFINID:ZDB-GENE-040426-2745 Length:329 Species:Danio rerio


Alignment Length:319 Identity:179/319 - (56%)
Similarity:222/319 - (69%) Gaps:27/319 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 QQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGYFGM 81
            ||.:|..|:||||||||:|||||||:||.|||||||:   .|:::|.||.||..||.:.||||||
Zfish     3 QQISLPAKLINGGIAGIVGVTCVFPIDLAKTRLQNQR---QGQQVYKSMIDCLIKTVRTEGYFGM 64

  Fly    82 YRGSGVNILLITPEKAIKLTANDYFRHKLTTKDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQ 146
            |||:.||:.|:||||||||.|||:||..|:.....|.:..:|:||..||..|:|||||||:||||
Zfish    65 YRGAAVNLTLVTPEKAIKLAANDFFRCHLSRNGRGLNVFKEMLAGCAAGMCQVIVTTPMEMLKIQ 129

  Fly   147 MQDAGRVAA---------AAKLAGKTV-------------EKVSATQLASQLIKDKGIFGLYKGI 189
            :|||||:||         ..:||..||             ..|||||:|.:|:..:||.|||||:
Zfish   130 LQDAGRLAAQQRKPGLIPPTRLAANTVLCRSYNVVPNSSARAVSATQIARELLHTQGIQGLYKGL 194

  Fly   190 GATGLRDVTFSIIYFPLFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRL 254
            |||.||||.|||:||||||.||.||....|.:  |.|:.||::|..||||||:||||.|||||||
Zfish   195 GATLLRDVPFSIVYFPLFANLNKLGKPSPDEA--APFYWSFISGCVAGSTAAVAVNPCDVVKTRL 257

  Fly   255 QAIKKADGEKEFKGISDCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAE 313
            |::.|...|..:.||.||.:|.::.|||:||.||..||.:||||||||.|.:|:|||.|
Zfish   258 QSLSKGANEDTYSGIVDCFSKIMRREGPSAFLKGAGCRALVIAPLFGIVQVMYFLGVGE 316

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 49/76 (64%)
Mito_carr 115..213 CDD:278578 61/119 (51%)
Mito_carr 226..307 CDD:278578 47/80 (59%)
slc25a55aNP_998573.1 PTZ00169 1..292 CDD:240302 162/293 (55%)
Mito_carr 3..97 CDD:278578 62/96 (65%)
Mito_carr 100..218 CDD:278578 61/117 (52%)
Mito_carr 228..310 CDD:278578 47/81 (58%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 135 1.000 Domainoid score I4914
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2237
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm6363
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - O PTHR45678
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X982
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.840

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