DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc25a40

DIOPT Version :10

Sequence 1:NP_650134.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_989316.1 Gene:slc25a40 / 394941 XenbaseID:XB-GENE-1003942 Length:341 Species:Xenopus tropicalis


Alignment Length:350 Identity:91/350 - (26%)
Similarity:134/350 - (38%) Gaps:82/350 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 QPQHQQFALLP--KIINGGIAGIIGVTCVFPLDLVKTRLQNQQ---------------------- 53
            :|..:...:.|  ::|...:..::....|.|||:||.|||.|.                      
 Frog     6 EPVQEAINITPSQQMIASSMGALLTSFFVTPLDVVKIRLQAQSKPFIKGKCFVYCNGLMDHLCLC 70

  Fly    54 IGPNGERMYNS------MFDCFRKTYKAEGYFGMYRGSGVNILLITPEKAIKLTANDYFRHKLTT 112
            ...||:..|.:      ..|.|.:..:.||...::.|....:::..|...|..|..|..|..|..
 Frog    71 TNGNGKAWYRAPGHFRGTTDAFVQIIRNEGIKSLWSGLPPTLVMAVPATVIYFTCYDQLRDILIR 135

  Fly   113 KDGKLPLTSQMVAGGLAGAFQIIVTTPMELLKIQMQDAGRVAAAAKLAGKTVEKVSATQLASQLI 177
            ...:....:.:|||..|..:...:.:|:||::.:||       ...|:.|.:.:.    :.|.:.
 Frog   136 SMPERAEIASLVAGATARLWSATLISPLELIRTKMQ-------YRPLSYKELRQC----IQSSVA 189

  Fly   178 KDKGIFGLYKGIGATGLRDVTFSIIYF--------PLFATLNDLGPRRNDGSGEAVFWCSFLAGL 234
            || |...|:||.|.|.||||.||.:|:        .|....|.|.|         .|..||.||.
 Frog   190 KD-GWLALWKGWGPTVLRDVPFSALYWHNYELVKQSLCQRYNTLQP---------TFAISFTAGA 244

  Fly   235 AAGSTAALAVNPFDVVKTRLQAIKKADGEKEFKGISDCITKTLKHEGPT--------------AF 285
            .:||.||:...||||||||.|.   ..||.|.      .|.:.|....|              ..
 Frog   245 VSGSIAAIVTLPFDVVKTRRQV---EVGELEM------FTYSQKRSSSTWKLMRAIVIENGFGGL 300

  Fly   286 FKGGLCRMIVIAPLFGIAQTVYYLG 310
            |.|.:.|:|.:||...|..:.|..|
 Frog   301 FAGLIPRLIKVAPACAIMISTYEFG 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_650134.1 PTZ00169 37..294 CDD:240302 82/306 (27%)
slc25a40NP_989316.1 Mito_carr 14..136 CDD:395101 26/121 (21%)
Solcar 1 14..132 25/117 (21%)
Solcar 2 140..224 27/95 (28%)
Mito_carr 143..225 CDD:395101 27/93 (29%)
Mito_carr 233..331 CDD:395101 33/110 (30%)
Solcar 3 234..328 33/109 (30%)

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