DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and CG18418

DIOPT Version :10

Sequence 1:NP_650134.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_647924.2 Gene:CG18418 / 38572 FlyBaseID:FBgn0035568 Length:311 Species:Drosophila melanogaster


Alignment Length:281 Identity:78/281 - (27%)
Similarity:128/281 - (45%) Gaps:28/281 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 PQHQQFALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEGY 78
            |.|.:|.:      ||.:|::....|.||||:|||:|..  |..|.|.|.:.|:...|..|.||.
  Fly    13 PTHMKFVM------GGTSGMLATCIVQPLDLLKTRMQIS--GTLGTREYKNSFEVLSKVLKNEGI 69

  Fly    79 FGMYRGSGVNILLITPEKAIKLTAN----DYFRHKLTTKDGKLP-LTSQMVAGGLAGAFQIIVTT 138
            ..:|.|....:|......:.|:...    |::|...    |..| :.:.|..|.:||||..:...
  Fly    70 LSLYNGLSAGLLRQATYTSAKMGVYQMELDWYRKNF----GNYPSMVASMTMGIVAGAFGAMCGN 130

  Fly   139 PMELLKIQMQDAGRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFSIIY 203
            |.|:..|:|....|:....:...|.|.....     :::||:|:..|::|...|..|.:..:::.
  Fly   131 PAEVALIRMMSDNRLMPEDRRNYKNVGDAFV-----RIVKDEGVVALWRGCLPTVGRAMVVNMVQ 190

  Fly   204 FPLFATL-NDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADGEKEFK 267
            ...::.: |.|....::|     ......|.|.:|...::...|.|:.|||:|.:|..||:.|:.
  Fly   191 LASYSLMKNQLHGYLSEG-----IPLHLTAALVSGLLTSVTSMPLDMAKTRIQQMKVIDGKPEYS 250

  Fly   268 GISDCITKTLKHEGPTAFFKG 288
            |..|.:.|.||:||..|.:||
  Fly   251 GTIDVLKKVLKNEGAFAVWKG 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_650134.1 PTZ00169 37..294 CDD:240302 72/258 (28%)
CG18418NP_647924.2 Mito_carr 10..108 CDD:395101 31/106 (29%)
Mito_carr 109..205 CDD:395101 23/100 (23%)
Mito_carr 208..300 CDD:395101 24/69 (35%)

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