DRSC/TRiP Functional Genomics Resources

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Protein Alignment GC1 and slc-25A18.1

DIOPT Version :9

Sequence 1:NP_001262490.1 Gene:GC1 / 41448 FlyBaseID:FBgn0260743 Length:321 Species:Drosophila melanogaster
Sequence 2:NP_510493.2 Gene:slc-25A18.1 / 181596 WormBaseID:WBGene00008979 Length:313 Species:Caenorhabditis elegans


Alignment Length:310 Identity:183/310 - (59%)
Similarity:229/310 - (73%) Gaps:15/310 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 FALLPKIINGGIAGIIGVTCVFPLDLVKTRLQNQQIGPNGERMYNSMFDCFRKTYKAEG------ 77
            |:..|||:|||:||||||:||||:||||||||||.:|.:|:..|:.:.||.::|:::.|      
 Worm     7 FSYGPKIMNGGLAGIIGVSCVFPIDLVKTRLQNQTVGADGKLQYSGIADCAKQTWRSGGASTLAK 71

  Fly    78 YFGMYRGSGVNILLITPEKAIKLTANDYFRHKLTTKDG--KLPLTSQMVAGGLAGAFQIIVTTPM 140
            :.|||.|||||||||||||||||.|||:||||| .|:|  :|.:...|:||||||.|||.|||||
 Worm    72 FRGMYSGSGVNILLITPEKAIKLVANDFFRHKL-AKEGEKQLSVGRGMLAGGLAGMFQISVTTPM 135

  Fly   141 ELLKIQMQDAGRVAAAAKLAGKTVEKVSATQLASQLIKDKGIFGLYKGIGATGLRDVTFSIIYFP 205
            |||||||||.||.....:      :|:|||||..:|:|:.||..||||:.:|..||||||:||||
 Worm   136 ELLKIQMQDQGRTLKPGQ------QKLSATQLTMKLVKENGIAALYKGLSSTLARDVTFSVIYFP 194

  Fly   206 LFATLNDLGPRRNDGSGEAVFWCSFLAGLAAGSTAALAVNPFDVVKTRLQAIKKADGEKEFKGIS 270
            |||.|:.|.||:.||||:|||:.||||||.:|:.::..|.|.||:|||:|.|.|...|..:|.|.
 Worm   195 LFAYLDSLAPRKPDGSGDAVFYGSFLAGLTSGAASSFCVTPLDVIKTRMQTINKGANEIVYKNIP 259

  Fly   271 DCITKTLKHEGPTAFFKGGLCRMIVIAPLFGIAQTVYYLGVAEGLLGYQK 320
            |......|:|||.|.|||..|||:|:||||||||||||:||||.:||.||
 Worm   260 DAFVTIFKNEGPKALFKGAACRMMVMAPLFGIAQTVYYIGVAEKILGIQK 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GC1NP_001262490.1 Mito_carr 36..113 CDD:278578 50/82 (61%)
Mito_carr 115..213 CDD:278578 57/99 (58%)
Mito_carr 226..307 CDD:278578 43/80 (54%)
slc-25A18.1NP_510493.2 PTZ00169 3..278 CDD:240302 158/277 (57%)
Mito_carr 5..108 CDD:278578 63/101 (62%)
Mito_carr 110..199 CDD:278578 55/94 (59%)
Mito_carr 215..296 CDD:278578 43/80 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160167848
Domainoid 1 1.000 128 1.000 Domainoid score I3298
eggNOG 1 0.900 - - E1_KOG0750
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H69383
Inparanoid 1 1.050 352 1.000 Inparanoid score I1327
Isobase 1 0.950 - 0.878984 Normalized mean entropy S1412
OMA 1 1.010 - - QHG53612
OrthoDB 1 1.010 - - D458796at33208
OrthoFinder 1 1.000 - - FOG0002230
OrthoInspector 1 1.000 - - mtm4728
orthoMCL 1 0.900 - - OOG6_104895
Panther 1 1.100 - - LDO PTHR45678
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R4126
SonicParanoid 1 1.000 - - X982
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1716.790

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